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Evaluate whether we can update numpy to latest
engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsStatus: Open.#276 In diff-use/sampleworks;Pipe protpardelle options through to the model
engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsStatus: Open.#258 In diff-use/sampleworks;Typecheck warning
engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsStatus: Open.#249 In diff-use/sampleworks;partial_diffusion_steps and guidance_start should be [0.0, 1.0] directly in the guidance script arguments, not a step number
documentationImprovements or additions to documentationImprovements or additions to documentationenhancementNew feature or requestNew feature or requestStatus: Open.#246 In diff-use/sampleworks;GPU memory contention when generating synthetic data with n_jobs>1 on CUDA
engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistshelp wantedExtra attention is neededExtra attention is neededStatus: Open.#242 In diff-use/sampleworks;Bump Protenix to latest version and test latest model checkpoints
enhancementNew feature or requestNew feature or requestStatus: Open.#239 In diff-use/sampleworks;Make sure multi-chain support works in patch_output_cif_files, which will require modifications to protenix structure processing
bugSomething isn't workingSomething isn't workingCIF issuesAll issues related to the writing, reading, or parsing of CIF files or objects.All issues related to the writing, reading, or parsing of CIF files or objects.engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsP0Highest priority workHighest priority workStatus: Open.#238 In diff-use/sampleworks;- Status: Open.#228 In diff-use/sampleworks;
Our tests appear to require access to some remote server, and we sometimes get timeouts
bugSomething isn't workingSomething isn't workingengineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsStatus: Open.#216 In diff-use/sampleworks;Evaluation scripts should get the locations of maps or input pdb files used from the results metadata, not from a config file or command line arguments
CIF issuesAll issues related to the writing, reading, or parsing of CIF files or objects.All issues related to the writing, reading, or parsing of CIF files or objects.engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsStatus: Open.#213 In diff-use/sampleworks;Address ty warnings so we can undo the changes to the tools.ty section in pyproject.toml in #189
engineeringTask that is best suited to software engineers, not research scientistsTask that is best suited to software engineers, not research scientistsenhancementNew feature or requestNew feature or requestStatus: Open.#197 In diff-use/sampleworks;Refactor
annotate_structure_for_wrapper_typeas a util method rather than a method intests/conftest.pyenhancementNew feature or requestNew feature or requestgood first issueGood for newcomersGood for newcomersStatus: Open.#192 In diff-use/sampleworks;