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RUM : RNA Seq Unified Mapper

Welcome, gentle user. These pages describe the RNA-Seq Unified Mapper (RUM). We recommend reading them roughly in the order listed here.

You can find the latest version of RUM at our downloads page. If you find any issues or have any feature requests, please enter them into our issues list. We would really appreciate your feedback.

User guide

1. About RUM
2. Installing RUM
3. Installing indexes
4. Creating indexes (optional)
5. Running RUM
6. RUM output files
7. Running RUM on a cluster (optional)
8. Running RUM on AWS (via StarCluster) (optional)

Developer guide

If you make changes to RUM, you'll want to take a look at these pointers:

• Developer guide

Release Notes

• 2.0.x (consolidated)
• 2.0.4
• 2.0.3
• 2.0.2
• 2.0.1