Repositories list

• .github

  Public

  tidyomics/.github’s past year of commit activity
  00 forks•11 star•00 issues•00 pull requests•Updated Apr 16, 2026Apr 16, 2026

• plyranges

  Public

  tidyomics/plyranges’s past year of commit activity
  A grammar of genomic data transformation

  genomicsdplyrtidy-data+ 3

  genomicsdplyrtidy-databioconductordata-analysisgenomic-ranges

  R

  •1818 forks•154154 stars•3939 issues•00 pull requests•Updated Apr 2, 2026Apr 2, 2026

• tidybulk

  Public template

  tidyomics/tidybulk’s past year of commit activity
  Brings bulk and pseudobulk transcriptomics to the tidyverse

  pipetidy-datatidyverse+ 17

  pipetidy-datatidyversepcabioconductordeseq2entreztidytranscriptstranscriptomics+ 10

  R

  •2626 forks•178178 stars•1515 issues•33 pull requests•Updated Apr 2, 2026Apr 2, 2026

• tidyomicsBlog

  Public

  tidyomics/tidyomicsBlog’s past year of commit activity
  The blog of tidyomics

  JavaScript

  •4343 forks•11 star•22 issues•00 pull requests•Updated Mar 22, 2026Mar 22, 2026

• tidySummarizedExperiment

  Public

  tidyomics/tidySummarizedExperiment’s past year of commit activity
  Brings SummarizedExperiment to the tidyverse

  genomicstidyversebioconductor+ 3

  genomicstidyversebioconductorrnaseqtranscriptomicssummarizedexperiment

  R

  •77 forks•3030 stars•44 issues•22 pull requests•Updated Mar 17, 2026Mar 17, 2026

• tidyprint

  Public

  tidyomics/tidyprint’s past year of commit activity
  Centralised biological data tidy abstractions and messaging

  R

  •

  GNU General Public License v3.0

  •00 forks•22 stars•55 issues•00 pull requests•Updated Mar 16, 2026Mar 16, 2026

• tidySingleCellExperiment

  Public

  tidyomics/tidySingleCellExperiment’s past year of commit activity
  Brings SingleCellExperiment objects to the tidyverse

  ggplot2dplyrplotly+ 7

  ggplot2dplyrplotlytidyversebioconductortibbletidyrsingle-cell-rna-seqsingle-cell-sequencingsinglecellexperiment

  R

  •99 forks•3737 stars•1515 issues•33 pull requests•Updated Nov 10, 2025Nov 10, 2025

• tidyomicsWorkshop

  Public

  tidyomics/tidyomicsWorkshop’s past year of commit activity
  Tidy genomic and transcriptomic analyses

  TeX

  •

  Other

  •1414 forks•11 star•33 issues•22 pull requests•Updated Oct 31, 2025Oct 31, 2025

• tidyomics

  Public

  tidyomics/tidyomics’s past year of commit activity
  Easily install and load packages from the tidyomics ecosystem

  genomicstidyversetranscriptomics+ 1

  genomicstidyversetranscriptomicscytometry

  R

  •

  MIT License

  •22 forks•7575 stars•1616 issues•00 pull requests•Updated Oct 28, 2025Oct 28, 2025

• tidydeseq2

  Public

  tidyomics/tidydeseq2’s past year of commit activity
  Repo with code demonstrating tidybulk for DESeq2

  R

  •

  MIT License

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 11, 2025Sep 11, 2025

• tidyomicsBlog_ARCHIVE

  Public archive
  The blog of tidyomics

  rgenomicstidyverse+ 3

  rgenomicstidyversebioconductorproteomicstranscriptomics

  HTML

  •

  Other

  •66 forks•1414 stars•1111 issues•44 pull requests•Updated Jul 12, 2025Jul 12, 2025

• omicslog

  Public
  Log operations of R omic analyses

  bioinformaticsreproducible-researchbioconductor

  bioinformaticsreproducible-researchbioconductor

  R

  •

  GNU General Public License v3.0

  •11 fork•22 stars•55 issues•11 pull request•Updated Jul 1, 2025Jul 1, 2025

• tidy-intro-talk

  Public
  Intro talk for tidyomics project

  00 forks•22 stars•00 issues•00 pull requests•Updated Jun 3, 2025Jun 3, 2025

• tidySpatialWorkshop

  Public
  Tidy spatial analyses workshop

  workshoptidyversebioconductor+ 4

  workshoptidyversebioconductorspatial-analysisimagingsingle-cell-rna-seqtidyomics

  TeX

  •

  Other

  •1414 forks•55 stars•00 issues•22 pull requests•Updated May 30, 2025May 30, 2025

• plyinteractions

  Public
  R

  •11 fork•22 stars•11 issue•00 pull requests•Updated Jul 10, 2024Jul 10, 2024

• tidyomicsWorkshopBioc2023

  Public
  Tidy genomic and transcriptomic analyses

  TeX

  •

  Other

  •1414 forks•77 stars•22 issues•00 pull requests•Updated May 18, 2024May 18, 2024

• tidyomics_paper

  Public
  This repository includes the code used for the tidyomics paper

  R

  •11 fork•11 star•00 issues•00 pull requests•Updated Mar 19, 2024Mar 19, 2024

• tidy-genomics-talk

  Public
  R

  •22 forks•1818 stars•00 issues•00 pull requests•Updated Oct 17, 2023Oct 17, 2023

• genomics-todos

  Public
  00 forks•00 stars•88 issues•00 pull requests•Updated Aug 15, 2023Aug 15, 2023

• tidy-ranges-tutorial

  Public
  TeX

  •00 forks•55 stars•22 issues•00 pull requests•Updated Aug 3, 2023Aug 3, 2023