Repositories list

• upptime

  Public

  ome/upptime’s past year of commit activity
  📈 Uptime monitor and status page for OME, powered by @upptime

  uptime-monitorstatus-pageupptime

  uptime-monitorstatus-pageupptime

  Markdown

  •

  MIT License

  •11 fork•11 star•11 issue•11 pull request•Updated Apr 23, 2026Apr 23, 2026

• conda-bioformats2raw

  Public

  ome/conda-bioformats2raw’s past year of commit activity
  Bio-Formats image file format to raw format converter

  Batchfile

  •66 forks•88 stars•22 issues•11 pull request•Updated Apr 23, 2026Apr 23, 2026

• omero-blitz

  Public

  ome/omero-blitz’s past year of commit activity
  Gradle project containing Ice remoting code for OMERO

  componentserverjar+ 2

  componentserverjarlibomero

  Java

  •

  GNU General Public License v2.0

  •1515 forks•00 stars•3131 issues•11 pull request•Updated Apr 22, 2026Apr 22, 2026

• ngff-spec

  Public

  ome/ngff-spec’s past year of commit activity
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  Python

  •1010 forks•1212 stars•88 issues•88 pull requests•Updated Apr 22, 2026Apr 22, 2026

• omero-py

  Public

  ome/omero-py’s past year of commit activity
  Python project containing Ice remoting code for OMERO

  pythoncomponentlib+ 2

  pythoncomponentlibomeroomero-py

  Python

  •

  GNU General Public License v2.0

  •3535 forks•2828 stars•5757 issues•44 pull requests•Updated Apr 22, 2026Apr 22, 2026

• www.openmicroscopy.org

  Public
  OME main website

  jekyll-siteome

  jekyll-siteome

  HTML

  •

  Creative Commons Attribution 4.0 International

  •2626 forks•66 stars•1515 issues•00 pull requests•Updated Apr 22, 2026Apr 22, 2026

• omero-build

  Public

  ome/omero-build’s past year of commit activity
  OMERO top-level build for all components

  buildomerometa-repo

  buildomerometa-repo

  Dockerfile

  •77 forks•11 star•33 issues•33 pull requests•Updated Apr 22, 2026Apr 22, 2026

• status

  Public

  ome/status’s past year of commit activity
  Status dashboard for the OME project

  statusdashboardgh-pages+ 1

  statusdashboardgh-pagesome

  HTML

  •55 forks•11 star•66 issues•11 pull request•Updated Apr 22, 2026Apr 22, 2026

• ngff

  Public

  ome/ngff’s past year of commit activity
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  data-sciencecloudspec+ 2

  data-sciencecloudspecbioimagingfile-formats

  Python

  •

  Other

  •6767 forks•156156 stars•114114 issues•66 pull requests•Updated Apr 22, 2026Apr 22, 2026

• omero-figure

  Public

  ome/omero-figure’s past year of commit activity
  An OMERO.web app for creating Figures from images in OMERO

  webappomero

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •3838 forks•2020 stars•6060 issues•33 pull requests•Updated Apr 21, 2026Apr 21, 2026

• omero-renderer

  Public
  Gradle project containing rendering functionality for OMERO

  componentgradlejar+ 1

  componentgradlejaromero

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•22 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• ome-ngff-validator

  Public
  Web page for validating OME-NGFF files

  ome-zarr

  ome-zarr

  Svelte

  •

  BSD 2-Clause "Simplified" License

  •99 forks•1111 stars•1313 issues•66 pull requests•Updated Apr 21, 2026Apr 21, 2026

• omero-zarr-pixel-buffer

  Public
  OMERO Zarr Pixel Buffer Implementation

  Java

  •

  GNU General Public License v2.0

  •1010 forks•00 stars•00 issues•33 pull requests•Updated Apr 21, 2026Apr 21, 2026

• ome-zarr-py

  Public
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.

  omezarrngff+ 1

  omezarrngffome-zarr

  Python

  •

  Other

  •6767 forks•234234 stars•7070 issues•1010 pull requests•Updated Apr 20, 2026Apr 20, 2026

• EMBL-EBI-imaging-course-04-2025

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •66 forks•66 stars•00 issues•00 pull requests•Updated Apr 17, 2026Apr 17, 2026

• omero-iviewer

  Public
  An OMERO.web app allowing to view images

  webappomero

  webappomero

  JavaScript

  •

  Other

  •3535 forks•2020 stars•6161 issues•2121 pull requests•Updated Apr 16, 2026Apr 16, 2026

• ome2024-ngff-challenge

  Public
  Project planning and material repository for the 2024 challenge to generate 1 PB of OME-Zarr data

  ome-ngffome-zarr-converter

  ome-ngffome-zarr-converter

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2020 forks•2121 stars•1313 issues•44 pull requests•Updated Apr 16, 2026Apr 16, 2026

• omero-web-apps-examples

  Public template
  Example Setup for Web Apps

  Python

  •44 forks•11 star•22 issues•1818 pull requests•Updated Apr 15, 2026Apr 15, 2026

• omero-demo-cleanup

  Public
  A CLI plugin for managing the disk space on the OME demo server

  Python

  •

  GNU General Public License v2.0

  •44 forks•22 stars•00 issues•11 pull request•Updated Apr 13, 2026Apr 13, 2026

• ome_zarr_test_suite

  Public
  Test suite of reader and writer implementations

  Python

  •77 forks•55 stars•33 issues•33 pull requests•Updated Apr 13, 2026Apr 13, 2026

• napari-ome-zarr

  Public
  A napari plugin for zarr backed OME-NGFF images

  pythonnapari-pluginzarr+ 1

  pythonnapari-pluginzarrngff

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •2525 forks•4949 stars•3030 issues•66 pull requests•Updated Apr 13, 2026Apr 13, 2026

• omero-guides

  Public
  Guides for using OMERO

  docshelpomero+ 3

  docshelpomeroguidesmanualsomero-training

  Python

  •

  BSD 2-Clause "Simplified" License

  •66 forks•11 star•1414 issues•44 pull requests•Updated Apr 13, 2026Apr 13, 2026

• omero-ms-zarr

  Public
  Experimental micro-service for implementing the Zarr spec over HTTP

  microserviceioomero+ 1

  microserviceioomerozarr

  Java

  •

  GNU General Public License v2.0

  •1212 forks•2121 stars•1717 issues•11 pull request•Updated Apr 13, 2026Apr 13, 2026

• omero-guide-fiji

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •88 forks•22 stars•00 issues•22 pull requests•Updated Apr 9, 2026Apr 9, 2026

• omero-guide-python

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •1010 forks•1010 stars•11 issue•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• omero-gradle-plugins

  Public
  Super-project of all gradle plugins for OMERO

  buildgradleplugins+ 2

  buildgradlepluginsomerometa-repo

  Dockerfile

  •99 forks•11 star•11 issue•66 pull requests•Updated Apr 8, 2026Apr 8, 2026

• EMBL-EBI-imaging-course-04-2024

  Public
  Jupyter Notebook

  •

  BSD 2-Clause "Simplified" License

  •44 forks•44 stars•00 issues•00 pull requests•Updated Apr 8, 2026Apr 8, 2026

• presentations

  Public
  HTML-based presentations from the OME team.

  htmlreveal-jspresentations

  htmlreveal-jspresentations

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1919 forks•00 stars•00 issues•00 pull requests•Updated Apr 7, 2026Apr 7, 2026

• omero-documentation

  Public
  Sphinx-based documentation for the Open Microscopy Environment

  documentationomeroome

  documentationomeroome

  Python

  •

  BSD 2-Clause "Simplified" License

  •5252 forks•2424 stars•2222 issues•33 pull requests•Updated Apr 1, 2026Apr 1, 2026

• omero-romio

  Public
  Gradle project for the ROMIO library of OMERO

  libraryjario+ 1

  libraryjarioomero

  Java

  •

  GNU General Public License v2.0

  •1313 forks•00 stars•33 issues•11 pull request•Updated Mar 31, 2026Mar 31, 2026