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@jinworks Interface between mathematics, AI and biomedicine

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    12 repositories

    • SpatialCellChat

      Public
      R
      •
      GNU General Public License v3.0
      •2•8•10•0•Updated Apr 9, 2026Apr 9, 2026

    • CellChat

      Public
      R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
      single-cell-analysisspatial-transcriptomicscell-cell-interaction
      single-cell-analysisspatial-transcriptomicscell-cell-interactioncell-cell-communicationmicroenvironment
      R
      •
      GNU General Public License v3.0
      •107•587•353•9•Updated Mar 4, 2026Mar 4, 2026

    • MultiSP

      Public
      Python
      •
      MIT License
      •0•4•0•0•Updated Feb 24, 2026Feb 24, 2026

    • jinworks.github.io

      Public
      Homepage of Dr. Suoqin Jin (https://jinworks.github.io/)
      CSS
      •
      MIT License
      •0•0•0•0•Updated Feb 18, 2026Feb 18, 2026

    • MultiSP_reproducibility

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Nov 10, 2025Nov 10, 2025

    • SCP-SeuratV5

      Public
      Developmental version of SCP, adapted for Seurat V5
      R
      •124•0•0•0•Updated Oct 19, 2025Oct 19, 2025

    • scMC_SeuratWrapper

      Public
      HTML
      •0•0•0•0•Updated Oct 16, 2025Oct 16, 2025

    • easySCF

      Public
      R
      •6•0•0•0•Updated Jun 16, 2025Jun 16, 2025

    • R_for_Beginners

      Public
      R tutorials from scratch
      HTML
      •1•4•0•0•Updated Nov 23, 2023Nov 23, 2023

    • scAB

      Public
      scAB detects multiresolution cell states with clinical significance
      HTML
      •
      GNU General Public License v3.0
      •5•22•0•0•Updated Nov 14, 2022Nov 14, 2022

    • scEpath

      Public
      An energy landscape-based approach for measuring developmental states and inferring cellular trajectories from single cell RNA-seq data
      C++
      •11•0•0•0•Updated Feb 17, 2021Feb 17, 2021

    • scAI

      Public
      An unsupervised approach for the integrative analysis of single-cell multi-omics data
      R
      •
      GNU General Public License v3.0
      •8•0•0•0•Updated Nov 16, 2020Nov 16, 2020
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