Repositories list

• imodels-experiments

  Public
  Experiments with experimental rule-based models to go along with imodels.

  pythonrulesdata-science+ 12

  pythonrulesdata-sciencemachine-learningaijupytertabular-datapython3decision-treestrees+ 5

  Jupyter Notebook

  •66 forks•1818 stars•55 issues•11 pull request•Updated Mar 11, 2026Mar 11, 2026

• yugroup-website

  Public
  Website for yu group

  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Oct 22, 2025Oct 22, 2025

• pcs-workflow

  Public
  Code for manuscript "PCS Workflow for Veridical Data Science in the Age of AI"

  Jupyter Notebook

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 14, 2025Oct 14, 2025

• vds-book-supplementary

  Public
  Jupyter Notebook

  •2828 forks•7777 stars•44 issues•00 pull requests•Updated Jul 1, 2025Jul 1, 2025

• sMPS2

  Public
  Code for manuscript "A simplified MyProstateScore2.0 for high-grade prostate cancer"

  HTML

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  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Jun 15, 2025Jun 15, 2025

• epistasis-cardiac-hypertrophy

  Public
  Code for manuscript "Epistasis regulates genetic control of cardiac hypertrophy"

  HTML

  •

  MIT License

  •22 forks•11 star•00 issues•00 pull requests•Updated Jun 15, 2025Jun 15, 2025

• PCSRanking

  Public
  Code for manuscript "A simplified MyProstateScore2.0 for high-grade prostate cancer"

  HTML

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jun 15, 2025Jun 15, 2025

• losiRF

  Public
  Code for manuscript "Epistasis regulates genetic control of cardiac hypertrophy"

  HTML

  •

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Jun 15, 2025Jun 15, 2025

• simChef

  Public
  An R package to facilitate PCS simulation studies.

  R

  •

  GNU General Public License v3.0

  •00 forks•2323 stars•1818 issues•33 pull requests•Updated Feb 26, 2025Feb 26, 2025

• MS-analysis-NMF

  Public
  Simulation study exploring the utility of non-negative matrix factorization (NMF) for deconvolving complex mass spectra

  00 forks•00 stars•00 issues•00 pull requests•Updated Aug 5, 2024Aug 5, 2024

• veridical-flow

  Public
  Making it easier to build stable, trustworthy data-science pipelines based on the PCS framework.

  workflowdata-sciencemachine-learning+ 9

  workflowdata-sciencemachine-learningtutorialstatisticsaimlpandaspython3preprocessing+ 2

  Jupyter Notebook

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  MIT License

  •88 forks•7272 stars•44 issues•33 pull requests•Updated Feb 12, 2024Feb 12, 2024

• iterative-Random-Forest

  Public
  Python implementation of iterative-random-forests

  pythondata-sciencemachine-learning+ 3

  pythondata-sciencemachine-learningscikit-learninteractionsiterative-random-forests

  Cython

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  Other

  •2222 forks•6767 stars•1010 issues•00 pull requests•Updated Dec 20, 2023Dec 20, 2023

• covid19-severity-prediction

  Public
  Extensive and accessible COVID-19 data + forecasting for counties and hospitals. 📈

  visualizationdata-sciencestatistics+ 17

  visualizationdata-sciencestatisticspython3forecastingdata-analysisrisk-assessmentrisk-modellingoutbreakcounty-health-data+ 10

  Jupyter Notebook

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  MIT License

  •9292 forks•230230 stars•33 issues•00 pull requests•Updated Nov 13, 2023Nov 13, 2023

• stat-215a-fall-2023

  Public
  CSS

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  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 5, 2023Oct 5, 2023

• clinical-rule-vetting

  Public
  Learning clinical-decision rules with interpretable models.

  data-sciencemachine-learningai+ 12

  data-sciencemachine-learningaiscikit-learnpython3medicaldatasetstabilityinterpretabilityrule-based+ 5

  Jupyter Notebook

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  MIT License

  •1111 forks•2121 stars•00 issues•44 pull requests•Updated Aug 10, 2023Aug 10, 2023

• vthemes

  Public
  An R package with modern themes for ggplot2 and R Markdown documents

  HTML

  •

  GNU General Public License v3.0

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jul 17, 2023Jul 17, 2023

• vdocs

  Public
  An R package for beautiful and easy documentation of PCS-style analyses

  HTML

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  GNU General Public License v3.0

  •11 fork•44 stars•88 issues•00 pull requests•Updated Jun 6, 2023Jun 6, 2023

• molecular-partner-prediction

  Public
  Predicting successful CME events using only clathrin markers. 🦠📈

  trackingdata-sciencemachine-learning+ 13

  trackingdata-sciencemachine-learningbioinformaticsstatisticscomputational-biologypredictionpython3classificationsegmentation+ 6

  Jupyter Notebook

  •22 forks•44 stars•00 issues•00 pull requests•Updated Feb 6, 2023Feb 6, 2023

• stat-215a-fall-2022

  Public
  CSS

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  Other

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 29, 2022Aug 29, 2022

• autogluon

  Public
  AutoGluon: AutoML for Image, Text, and Tabular Data

  Python

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  Apache License 2.0

  •1.1k1.1k forks•00 stars•00 issues•00 pull requests•Updated Jun 15, 2022Jun 15, 2022

• dgpoix

  Public
  Generate synthetic data that is as fresh as the real thing

  data-sciencedatar+ 2

  data-sciencedatarsimulationsynthetic-data

  R

  •

  Other

  •00 forks•33 stars•66 issues•00 pull requests•Updated May 18, 2022May 18, 2022

• mjo

  Public
  Interpretable forecasting of the Madden-Julian Oscillation

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated May 4, 2022May 4, 2022

• r-dev

  Public
  Materials for Yu Group software series R presentation on 04/27/2022.

  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 27, 2022Apr 27, 2022

• adaptive-wavelets

  Public
  Adaptive, interpretable wavelets across domains (NeurIPS 2021)

  machine-learningstatisticsdeep-learning+ 8

  machine-learningstatisticsdeep-learningneural-networkpytorchinterpretabilitywaveletswavelet-analysisdistillationxai+ 1

  Jupyter Notebook

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  MIT License

  •1313 forks•8282 stars•33 issues•00 pull requests•Updated Jan 30, 2022Jan 30, 2022

• stat-215a-fall-2021

  Public
  CSS

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  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 1, 2021Nov 1, 2021

• neuroimaging-analysis

  Public
  Analysis of neuroimaging tissue from the Berkeley Advanced Imaging Center.

  Jupyter Notebook

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 28, 2021Sep 28, 2021

• covid19-dashboard

  Public
  Dashboard for comparing different counties.

  HTML

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  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 14, 2021May 14, 2021

• transfer-learning

  Public
  Understanding transfer learning.

  Jupyter Notebook

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 2, 2021Apr 2, 2021

• interaction_selection

  Public
  code for interaction selection

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Jan 20, 2021Jan 20, 2021

• stat-215a-fall-2020

  Public
  STAT 215A course website for Fall 2020.

  CSS

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  Other

  •00 forks•11 star•00 issues•00 pull requests•Updated Nov 17, 2020Nov 17, 2020