All

22 repositories

masif-neosurf
Public
MaSIF-neosurf: surface-based protein design for ternary complexes.
drug-design protein-design molecular-surface
drug-design protein-design molecular-surface geometric-deep-learning
Python
•
Apache License 2.0
•31•174•15•1•Updated Feb 6, 2026Feb 6, 2026
DrugFlow
Public
Multi-domain Distribution Learning for De Novo Drug Design
generative-model drug-design equivariance
generative-model drug-design equivariance protein-flexibility
Python
•
MIT License
•25•156•4•1•Updated Jan 26, 2026Jan 26, 2026
FragmentScope
Public
Jupyter Notebook
•
MIT License
•0•3•0•0•Updated Dec 11, 2025Dec 11, 2025
PIPS-Design
Public
code for phosphorylation switch design
Python
•1•3•0•0•Updated Oct 30, 2025Oct 30, 2025
masif_seed
Public
Masif seed paper repository
Jupyter Notebook
•
Apache License 2.0
•39•173•14•0•Updated Sep 22, 2025Sep 22, 2025
FibrilSite
Public
Computational pipeline for defining Fibril sites and identifying shared features among sites from different fibrils
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Sep 16, 2025Sep 16, 2025
SwIL_SSM
Public
Jupyter Notebook
•
MIT License
•0•0•0•0•Updated Jul 25, 2025Jul 25, 2025
caffeine-multi-state-design
Public
Python
•
MIT License
•0•0•0•0•Updated May 25, 2025May 25, 2025
masif
Public
MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
protein-surface molecular-surface geometric-deep-learning
protein-surface molecular-surface geometric-deep-learning
Python
•
Apache License 2.0
•167•746•53•2•Updated Jun 19, 2024Jun 19, 2024
lpdi-epfl.github.io
Public
A new website for the lab
HTML
•0•0•0•3•Updated Apr 11, 2023Apr 11, 2023
masif-dockerfile
Public
Dockerfile
•
Apache License 2.0
•4•1•1•0•Updated Jan 23, 2023Jan 23, 2023
tbpipeline
Public
topobuilder pipeline
Roff
•2•4•0•0•Updated Apr 22, 2022Apr 22, 2022
topobuilder
Public
Parametric Building of de novo Functional Topologies
Python
•16•44•0•0•Updated Mar 11, 2022Mar 11, 2022
CDH_AIR
Public
Repository for Shui et al. 2021
Scala
•0•1•0•0•Updated Aug 3, 2021Aug 3, 2021
RosettaSurf
Public
Jupyter Notebook
•4•15•0•0•Updated Jun 11, 2021Jun 11, 2021
Bottom-up-de-novo-design
Public
Roff
•4•16•0•0•Updated Jun 22, 2020Jun 22, 2020
trivalent_cocktail
Public
Roff
•3•12•1•0•Updated May 16, 2020May 16, 2020
AcrIIC1X
Public
Computational design of anti-CRISPR proteins with improved inhibition potency and expanded specificity.
Jupyter Notebook
•
MIT License
•2•2•0•0•Updated Feb 10, 2020Feb 10, 2020
rstoolbox
Public
Python Toolbox For Rosetta Silent Files Processing
science data-visualization data-analysis
science data-visualization data-analysis protein-design protein-sequence
Python
•
MIT License
•9•16•0•0•Updated May 23, 2019May 23, 2019
FunFolDesData
Public
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
structural-biology protein-structure publication-data
structural-biology protein-structure publication-data rosetta protein-design protein-protein-interaction functional-protein-design
Scala
•9•21•0•0•Updated Apr 12, 2019Apr 12, 2019
STOP-CAR
Public
STOP-CAR repository
0•2•1•0•Updated Dec 1, 2018Dec 1, 2018
anti-CRISPR-designs
Public
Engineered anti-CRISPR proteins for optogenetic control of CRISPR/Cas9.
Scala
•0•1•0•0•Updated Aug 10, 2018Aug 10, 2018

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Laboratory of Protein Design and Immunoengineering

All

All

22 repositories

masif-neosurf

DrugFlow

FragmentScope

PIPS-Design

masif_seed

FibrilSite

SwIL_SSM

caffeine-multi-state-design

masif

lpdi-epfl.github.io

masif-dockerfile

tbpipeline

topobuilder

CDH_AIR

RosettaSurf

Bottom-up-de-novo-design

trivalent_cocktail

AcrIIC1X

rstoolbox

FunFolDesData

STOP-CAR

anti-CRISPR-designs

All

All

Repositories list

22 repositories