Skip to content

@Duke-GCB Duke Center for Genomic and Computational Biology

Change the repository type filter

All

    Repositories list

    100 repositories

    • calrissian

      Public
      CWL on Kubernetes
      kubernetescwlcwl-workflow
      kubernetescwlcwl-workflowcwl-workflows
      Python
      •
      MIT License
      •21•52•30•2•Updated Feb 4, 2026Feb 4, 2026

    • biostat-823

      Public
      Teaching materials for Biostat 823 course
      JavaScript
      •0•1•0•0•Updated Feb 5, 2025Feb 5, 2025

    • biostat-jupyter

      Public
      Jupyter Lab container for Biostat courses
      Dockerfile
      •
      MIT License
      •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

    • jupysql-utils

      Public
      Utilities module used by jupysql.
      Python
      •
      Apache License 2.0
      •9•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • jupysql

      Public
      Better SQL in Jupyter. 📊
      Python
      •
      Apache License 2.0
      •379•0•0•0•Updated Sep 9, 2024Sep 9, 2024

    • DukeDSClient

      Public
      Command line program to allow uploading, downloading, and managing projects in the duke-data-service.
      Python
      •
      MIT License
      •6•5•27•1•Updated Jun 11, 2024Jun 11, 2024

    • majoros-python-utils

      Public
      Majoros lab python modules and scripts
      Python
      •4•0•0•1•Updated May 24, 2024May 24, 2024

    • iMADS

      Public
      Web portal and supporting services that allow searching/creating TF predictions and preferences.
      JavaScript
      •
      MIT License
      •1•0•6•2•Updated Jan 31, 2024Jan 31, 2024

    • 2023-08-23-duke

      Public
      Website for the 2023 UPGG Informatics Orientation Bootcamp
      reproducible-sciencecarpentry-workshopduke-university
      reproducible-sciencecarpentry-workshopduke-university
      HTML
      •
      Other
      •1•0•0•0•Updated Aug 26, 2023Aug 26, 2023

    • scicomp-python

      Public
      Python lesson for GCB Academy: Intro to Scientific Computing
      Jupyter Notebook
      •8•1•0•0•Updated Aug 24, 2023Aug 24, 2023

    • bespin-mailer

      Public
      Bespin mail delivery service
      Python
      •
      MIT License
      •0•0•0•1•Updated May 22, 2023May 22, 2023

    • shiny_PD

      Public
      R
      •3•0•0•0•Updated May 19, 2023May 19, 2023

    • openshift-shiny

      Public
      OpenShift compatible Docker images/config for running shiny apps
      Dockerfile
      •
      MIT License
      •3•1•0•0•Updated May 17, 2023May 17, 2023

    • D4S2

      Public
      Web service to facilitate notification and transfer of projects in DukeDS
      Python
      •
      MIT License
      •0•0•21•5•Updated Apr 17, 2023Apr 17, 2023

    • GCB-Dockerfiles

      Public
      Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.
      Python
      •
      MIT License
      •4•7•9•0•Updated Mar 16, 2023Mar 16, 2023

    • datadelivery-ui

      Public
      An ember.js application frontend for d4s2
      JavaScript
      •0•0•10•8•Updated Mar 4, 2023Mar 4, 2023

    • prospatheia

      Public
      Web-based effort reporting tool for GCB informatics
      JavaScript
      •1•0•2•2•Updated Feb 2, 2023Feb 2, 2023

    • iMADS-worker

      Public
      Worker for generating on-demand predictions using Docker and CWL in iMADS
      Python
      •
      MIT License
      •1•0•0•5•Updated Dec 8, 2022Dec 8, 2022

    • gcb-web-auth

      Public
      Django app that integrates Duke OAuth
      Python
      •
      MIT License
      •0•0•6•2•Updated Dec 8, 2022Dec 8, 2022

    • bespin-jobtoken-generator

      Public
      Python
      •0•0•0•2•Updated Dec 7, 2022Dec 7, 2022

    • bespin-ui

      Public
      An ember.js application frontend for bespin-api
      JavaScript
      •
      MIT License
      •2•2•16•28•Updated Dec 7, 2022Dec 7, 2022

    • 2022-08-15-duke

      Public
      Website for the 2022 UPGG Informatics Orientation Bootcamp
      HTML
      •
      Other
      •0•0•0•0•Updated Aug 18, 2022Aug 18, 2022

    • 2021-08-09-Duke

      Public
      Website for the 2021 UPGG Informatics Orientation Bootcamp
      educationworkshop
      educationworkshop
      HTML
      •
      Other
      •0•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • 2019-08-12-Duke

      Public
      UPGG Informatics Orientation Bootcamp 2019
      Python
      •
      Other
      •0•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • 2018-08-13-Duke

      Public
      UPGG Informatics Orientation Bootcamp 2018
      Python
      •
      Other
      •1•0•0•0•Updated Aug 15, 2022Aug 15, 2022

    • DukeDataDeliveryPipeline

      Public
      Services that deliver data stored in Azure between users
      MIT License
      •1•0•0•1•Updated Jul 19, 2022Jul 19, 2022

    • topdata

      Public
      Website that dynamically generates trackhub directories
      Python
      •
      MIT License
      •0•0•2•3•Updated Apr 22, 2022Apr 22, 2022

    • helmod

      Public
      Harvard Extensions for Lmod deployment
      Ruby
      •
      Other
      •6•0•5•0•Updated Feb 1, 2022Feb 1, 2022

    • GGR-cwl

      Public
      CWL tools and workflows for GGR
      dnase-seqrna-seqchip-seq
      dnase-seqrna-seqchip-seqatac-seqcwl
      Common Workflow Language
      •
      MIT License
      •17•22•0•0•Updated Oct 12, 2021Oct 12, 2021

    • gcb-ansible-roles

      Public
      Ansible roles used by GCB Ansible Playbooks
      Jinja
      •0•0•5•1•Updated Sep 9, 2021Sep 9, 2021
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.