link libsqlite3.so.0 instead of libsqlite3.so

Author: mlin

.github/workflows/build.yml

@@ -28,7 +28,7 @@ jobs:
     steps:
     - uses: actions/checkout@v2
     - name: detect GIT_REVISION
-      run: echo "::set-env name=GIT_REVISION::$(git describe --tags --long --always)"
+      run: echo "::set-env name=GIT_REVISION::$(git describe --tags --always)"
     - name: build loaders
       run: |
         sudo apt-get install -y $APT_DEPS

CMakeLists.txt

@@ -31,16 +31,16 @@ set(CMAKE_CXX_STANDARD 11)
 set(CMAKE_CXX_STANDARD_REQUIRED ON)
 set(CMAKE_CXX_EXTENSIONS OFF)
 
-execute_process(COMMAND git describe --tags --long --always --dirty
+execute_process(COMMAND git describe --tags --always --dirty
                 OUTPUT_VARIABLE GIT_REVISION OUTPUT_STRIP_TRAILING_WHITESPACE)
                 set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DGIT_REVISION=\"\\\"${GIT_REVISION}\\\"\"")
 
 include_directories(${CMAKE_CURRENT_SOURCE_DIR}/include)
 add_library(genomicsqlite SHARED src/genomicsqlite.cc include/genomicsqlite.h src/json1.c src/hardcoded_refseq.hpp)
 if(ZSTD_WHOLE_ARCHIVE)
-    target_link_libraries(genomicsqlite PRIVATE sqlite3 SQLiteCpp -Wl,--whole-archive libzstd.a -Wl,--no-whole-archive)
+    target_link_libraries(genomicsqlite PRIVATE libsqlite3.so.0 SQLiteCpp -Wl,--whole-archive libzstd.a -Wl,--no-whole-archive)
 else()
-    target_link_libraries(genomicsqlite PRIVATE sqlite3 SQLiteCpp zstd)
+    target_link_libraries(genomicsqlite PRIVATE libsqlite3.so.0 SQLiteCpp zstd)
 endif()
 
 

Dockerfile

@@ -19,8 +19,9 @@ WORKDIR /work
 RUN wget -nv https://www.sqlite.org/2020/sqlite-amalgamation-${SQLITE_VERSION}.zip \
         && unzip -o sqlite-amalgamation-${SQLITE_VERSION}.zip
 WORKDIR /work/sqlite-amalgamation-${SQLITE_VERSION}
-RUN gcc -shared -o libsqlite3.so -fPIC -shared -Wl,-soname,libsqlite3.so -g ${CFLAGS} sqlite3.c
-RUN cp libsqlite3.so /usr/local/lib && cp *.h /usr/local/include
+RUN gcc -shared -o libsqlite3.so.0 -fPIC -shared -Wl,-soname,libsqlite3.so.0 -g ${CFLAGS} sqlite3.c
+RUN cp libsqlite3.so.0 /usr/local/lib && cp *.h /usr/local/include
+RUN ln -s /usr/local/lib/libsqlite3.so.0 /usr/local/lib/libsqlite3.so
 
 # Zstandard -- hacked with -fPIC for use with ZSTD_WHOLE_ARCHIVE
 WORKDIR /work