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The extension makes SQLite an efficient foundation for:
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1. Integrative genomics data warehouse
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* BED, GFF/GTF, FASTA, FASTQ, SAM, VCF, ...
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* One file, zero administration, portable between platforms and languages
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2. Slicing & basic analysis with indexed SQL queries, joins, & aggregations
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3. Transactional storage engine for API services, incremental reanalysis, real-time basecalling & metagenomics, ...
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4. Experimental new data models, before dedicated storage format & tooling are warranted, if ever.
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### Contraindications
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1. Huge numerical arrays: see [HDF5](https://www.hdfgroup.org/solutions/hdf5/), [Zarr](https://zarr.readthedocs.io/en/stable/), [Parquet](https://parquet.apache.org/), [Arrow](https://arrow.apache.org/). SQLite's [BLOB I/O](https://www.sqlite.org/c3ref/blob_open.html) leaves the door open for mash-ups!
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2. Parallel SQL analytics / OLAP: see [Spark](https://spark.apache.org/), [DuckDB](https://duckdb.org/), many commercial products. (Some bases can be covered with a sharding harness for a pool of threads with their own SQLite connections...)
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3. Streaming: SQLite I/O, while often highly sequential in practice, relies on randomly seeking throughout the database file.
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## Under construction

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