This collection of single cell rnaseq utilites uses uv to manage package dependencies.

Environment Variables

Used for Supabase Python SDK SUPABASE_KEY SUPABASE_URL

Used for Direct SQLAlchemy connection (for pandas) SUPABASE_URI

Background Utilities Data Relation to Cancer Cell Portal

# Write initialization steps
uv init
uv install

python extract_adata_metadata.py -i ./data/web
or
uv run extract_adata_metadata.py -i ./data/web