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1. pyXenium pyXenium Public

   Xenium I/O, multimodal analysis, topology workflows, and contour-native spatial profiling.

   Python

2. Cell-GPS Cell-GPS Public

   Cell-GPS is the Python package and reference implementation for Cophenetic Spatial Topology Embedding (COSTE), a spatial topology analysis framework for spatial omics data.

   Python

3. Agentic-Spatial-Pathologist Agentic-Spatial-Pathologist Public

   Agentic workflows for spatial pathology

   Python

4. pathology-evidence-ai pathology-evidence-ai Public

   Local-first pathology PDF evidence workspace with AI-assisted, citation-backed answers (PolyForm Noncommercial 1.0.0).

   Python

5. stGPT stGPT Public

   stGPT links tissue images, gene expression, and structure context for spatial transcriptomics.

   Python

6. HistoSeg HistoSeg Public

   Python toolkit for H&E image analysis and spatial contour analysis.

   HTML