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Updating bisulfite pipeline to accept bams and fastqs#996

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chrisamiller wants to merge 7 commits into
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chrisamiller:bisulfite_seq
Draft

Updating bisulfite pipeline to accept bams and fastqs#996
chrisamiller wants to merge 7 commits into
genome:masterfrom
chrisamiller:bisulfite_seq

Merge branch 'bisulfite_seq' of github.com:chrisamiller/analysis-work…

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