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Updated workflow for basic UMI-aware alignment and qc#840

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jasonwalker80:umi_alignment_qc_only_single_lane
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Updated workflow for basic UMI-aware alignment and qc#840
jasonwalker80 wants to merge 1 commit into
genome:masterfrom
jasonwalker80:umi_alignment_qc_only_single_lane

first pass at saving all BAMs/CRAMs that might be needed

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