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Magi 2 - Refactor pathing of database to be relative to scripts so not to require setup.py if code is moved

Status: Open.

#60 In biorack/magi;

· mwang87 opened on Sep 9, 2021

Can't open magi_workflow.py when running the script run_full_workflow_test.sh

Status: Open.

#59 In biorack/magi;

· vitorlimac2 opened on Oct 20, 2020

MAGI 2.0 Stereospecifity

Status: Open.

#56 In biorack/magi;

· hleegwater opened on Jan 15, 2020

Multiprocessing problems in new workflow

Status: Open.

#53 In biorack/magi;

· hleegwater opened on Oct 18, 2019

MAGI/User problems with accepting DNA/RNA

Status: Open.

#52 In biorack/magi;

· hleegwater opened on Oct 16, 2019

MAGI on Windows

Status: Open.

#47 In biorack/magi;

· hleegwater opened on Oct 9, 2019

Make magi_workflow --help function more informative

documentation

Status: Open.

#44 In biorack/magi;

· hleegwater opened on Oct 8, 2019

Accurate_mass_search

feature

Status: Open.

#43 In biorack/magi;

· hleegwater opened on Oct 4, 2019

Confirm that use of BLAST's -max_target_seqs is intentional

Status: Open.

#40 In biorack/magi;

· armish opened on Sep 29, 2018

gene-only results have duplicate gene-reactions in output

bug

Status: Open.

#39 In biorack/magi;

· oerbilgin opened on Nov 15, 2017

allow reactions to replace genes

feature

Status: Open.

#38 In biorack/magi;

· oerbilgin opened on Oct 26, 2017

Incorporate metabolic model module

Status: Open.

#37 In biorack/magi;

· oerbilgin opened on Oct 12, 2017

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New compound, reaction, gene databases