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Redefine the plot_points function in lefse_plot_cladogram.py to beautify the output results. And solve the shadow bug issue.

Status: Open.

#36 In SegataLab/lefse;

· LianheCai078 opened on Jul 14, 2025

LDA effect size no longer working!

Status: Open.

#34 In SegataLab/lefse;

· DrKADunn opened on Jan 17, 2025

How to use LDA when the number of samples is smaller than the number of features?

Status: Open.

#33 In SegataLab/lefse;

· Wu-BioAI opened on Dec 25, 2023

Lefse Installation "No ctypes found" error

Status: Open.

#32 In SegataLab/lefse;

· UmaJan opened on Dec 25, 2023

Please correct the “lefse_plot_cladogram.py” Line 270 in biobakery lefse online server

Status: Open.

#31 In SegataLab/lefse;

· jahernayeem opened on Jul 2, 2023

Lefse Installation Issue

Status: Open.

#30 In SegataLab/lefse;

· Hoeferlin opened on May 17, 2023

lefse.error

Status: Open.

#29 In SegataLab/lefse;

· Yuxia88 opened on Feb 9, 2023

import lefse.lefse error

Status: Open.

#28 In SegataLab/lefse;

· hahahaL opened on Jan 6, 2023

The result is not replicated from the same command

Status: Open.

#27 In SegataLab/lefse;

· nttg8100 opened on Dec 29, 2022

rpy2.rinterface_lib.embedded.RRuntimeError: Error: protect(): protection stack overflow

Status: Open.

#26 In SegataLab/lefse;

· huangziyan11111 opened on Dec 9, 2022

Plot only genus

Status: Open.

#25 In SegataLab/lefse;

· Kanyerezi30 opened on Oct 13, 2022

issue with wilcoxon signed rank test

Status: Open.

#24 In SegataLab/lefse;

· lauramason326 opened on Oct 4, 2022