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Wrap large mcool download in \dontrun to prevent example timeout on CI #147

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Merged
jpflores-13 merged 1 commit into from
Jun 12, 2026
Merged

Wrap large mcool download in \dontrun to prevent example timeout on CI #147

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8 changes: 5 additions & 3 deletions R/readCool.R
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Original file line number Diff line number Diff line change
Expand Up @@ -521,7 +521,8 @@ readCoolChroms <- function(file, resolution = NULL){
#' chromend = 22000000,
#' resolution = 1000000)
#'
#' ## .mcool file
#' ## .mcool file (large download, skipped in automated checks)
#' \dontrun{
#' mcoolFile <- file.path(tempdir(), "LEUK_HEK_PJA27_inter_30.mcool")
#' download.file(url = "https://zenodo.org/records/10906240/files/LEUK_HEK_PJA27_inter_30.mcool?download=1",
#' destfile = mcoolFile, mode = "wb")
Expand All @@ -530,10 +531,11 @@ readCoolChroms <- function(file, resolution = NULL){
#' mcoolData_100Kb <- readCool(file = mcoolFile, chrom = "2",
#' chromstart = 1000000, chromend = 5000000,
#' resolution = 100000)
#'
#' ## Read in data for chr2 at 2500Kb resolution
#'
#' ## Read in data for chr2 at 2500Kb resolution
#' mcoolData_2500Kb <- readCool(file = mcoolFile, chrom = "2",
#' resolution = 2500000)
#' }
#' @seealso \link[plotgardener]{readHic}
#'
#' @importFrom rlang inform warn
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6 changes: 4 additions & 2 deletions man/readCool.Rd
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