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arg_to_tskit fails with more than one mutation per site

Status: Open.

#131 In PalamaraLab/threads;

· petrelharp opened on Apr 21, 2026

some command-line arguments in docs use - but should use _

Status: Open.

#130 In PalamaraLab/threads;

· petrelharp opened on Apr 21, 2026

example data linked to from page incorrect (simple example does not run)

Status: Open.

#129 In PalamaraLab/threads;

· petrelharp opened on Apr 21, 2026

Verification of pgen sites

Status: Open.

#119 In PalamaraLab/threads;

· ArniFreyrG opened on Nov 25, 2025

More efficient multithreading

Status: Open.

#98 In PalamaraLab/threads;

· ArniFreyrG opened on Sep 1, 2025

Explore whether data-consistency can simplify the imputation pipeline

Status: Open.

#97 In PalamaraLab/threads;

· ArniFreyrG opened on Sep 1, 2025

Help strings for threads impute are wrong

Status: Open.

#96 In PalamaraLab/threads;

· ArniFreyrG opened on Sep 1, 2025

Run threads with polytomy flags

Status: Open.

#87 In PalamaraLab/threads;

· alexallmont opened on Jul 2, 2025

allow extracting vcf for a region

Status: Open.

#81 In PalamaraLab/threads;

· pierpal opened on Apr 29, 2025

Change int to size_t where appropriate

Status: Open.

#26 In PalamaraLab/threads;

· alexallmont opened on May 31, 2024

Profile usage of std containers

Status: Open.

#25 In PalamaraLab/threads;

· alexallmont opened on May 31, 2024

Enable dating segment as LS rather than IBD

Status: Open.

#23 In PalamaraLab/threads;

· zoitsang opened on May 28, 2024