change demultiplexed in mode

suiyue · suiyue · commit df6fbba3e1d6 · 2025-02-10T11:49:25.000+08:00
diff --git a/R/bambu.R b/R/bambu.R
@@ -149,7 +149,7 @@ bambu <- function(reads, annotations = NULL, genome = NULL, NDR = NULL,
             processByBam <- TRUE
         }
         if(mode == "multiplexed"){
-            if(is.null(demultiplexed)) 
+            if(!(demultiplexed)) 
                 demultiplexed <- TRUE
             cleanReads <- TRUE
             opt.em <- list(degradationBias = FALSE)

Original file line number	Diff line number	Diff line change
`@@ -149,7 +149,7 @@ bambu <- function(reads, annotations = NULL, genome = NULL, NDR = NULL,`
`149`	`149`	`processByBam <- TRUE`
`150`	`150`	`}`
`151`	`151`	`if(mode == "multiplexed"){`
`152`		`- if(is.null(demultiplexed))`
	`152`	`+ if(!(demultiplexed))`
`153`	`153`	`demultiplexed <- TRUE`
`154`	`154`	`cleanReads <- TRUE`
`155`	`155`	`opt.em <- list(degradationBias = FALSE)`