update os linux link for config

Author: Chen Ying

.github/workflows/check-bioc.yml

@@ -54,7 +54,7 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - { os: ubuntu-latest, r: '4.3', bioc: '3.17', cont: "bioconductor/bioconductor_docker:RELEASE_3_17", rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest" }
+          - { os: ubuntu-latest, r: '4.3', bioc: '3.17', cont: "bioconductor/bioconductor_docker:RELEASE_3_17", rspm: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" }
           - { os: macOS-latest, r: '4.3', bioc: '3.17'}
           - { os: windows-latest, r: '4.3', bioc: '3.17'}
           ## Check https://github.com/r-lib/actions/tree/master/examples
@@ -107,8 +107,8 @@ jobs:
         uses: actions/cache@v3
         with:
           path: ${{ env.R_LIBS_USER }}
-          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.3-${{ hashFiles('.github/depends.Rds') }}
-          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-devel-r-4.3-
+          key: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE-r-4.3-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ env.cache-version }}-${{ runner.os }}-biocversion-RELEASE-r-4.3-
 
       - name: Cache R packages on Linux
         if: "!contains(github.event.head_commit.message, '/nocache') && runner.os == 'Linux' "
@@ -121,7 +121,7 @@ jobs:
       - name: Install Linux system dependencies
         if: runner.os == 'Linux'
         run: |
-          sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "22.04")), collapse = " "))')
+          sysreqs=$(Rscript -e 'cat("apt-get update -y && apt-get install -y", paste(gsub("apt-get install -y ", "", remotes::system_requirements("ubuntu", "20.04")), collapse = " "))')
           echo $sysreqs
           sudo -s eval "$sysreqs"
 
@@ -315,13 +315,21 @@ jobs:
         if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
         run: R CMD INSTALL .
 
-      - name: Build and deploy pkgdown site
+
+      - name: Deploy pkgdown site to GitHub pages 🚀
         if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
-        run: |
-          git config --local user.name "$GITHUB_ACTOR"
-          git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
-          Rscript -e "pkgdown::deploy_to_branch(new_process = FALSE)"
-        shell: bash {0}
+        uses: JamesIves/github-pages-deploy-action@releases/v4
+        with:
+          clean: false
+          branch: gh-pages
+          folder: docs
+      # - name: Build and deploy pkgdown site
+      #   if: github.ref == 'refs/heads/devel' && env.run_pkgdown == 'true' && runner.os == 'Linux'
+      #   run: |
+      #     git config --local user.name "$GITHUB_ACTOR"
+      #     git config --local user.email "$GITHUB_ACTOR@users.noreply.github.com"
+      #     Rscript -e "pkgdown::deploy_to_branch(new_process = FALSE)"
+      #   shell: bash {0}
         ## Note that you need to run pkgdown::deploy_to_branch(new_process = FALSE)
         ## at least one locally before this will work. This creates the gh-pages
         ## branch (erasing anything you haven't version controlled!) and
@@ -331,7 +339,7 @@ jobs:
         if: failure()
         uses: actions/upload-artifact@v2
         with:
-          name: ${{ runner.os }}-biocversion-devel-r-4.3-results
+          name: ${{ runner.os }}-biocversion-RELEASE-r-4.3-results
           path: check
 
       - uses: docker/build-push-action@v1