CardiacModelling · MichaelClerx · Nov 11, 2025 · Nov 11, 2025 · Nov 11, 2025 · Nov 11, 2025
diff --git a/output-A01-02-03/13112023_MW2-staircaseramp-leak_fit-after/A03_sweep0.png b/output-A01-02-03/13112023_MW2-staircaseramp-leak_fit-after/A03_sweep0.png
diff --git a/output-A01-02-03/13112023_MW2-staircaseramp-leak_fit-after/A03_sweep1.png b/output-A01-02-03/13112023_MW2-staircaseramp-leak_fit-after/A03_sweep1.png
diff --git a/output-A01-02-03/13112023_MW2-staircaseramp_2-leak_fit-after/A03_sweep0.png b/output-A01-02-03/13112023_MW2-staircaseramp_2-leak_fit-after/A03_sweep0.png
diff --git a/output-A01-02-03/13112023_MW2-staircaseramp_2-leak_fit-after/A03_sweep1.png b/output-A01-02-03/13112023_MW2-staircaseramp_2-leak_fit-after/A03_sweep1.png
diff --git a/output-A01-02-03/QC-13112023_MW2.csv b/output-A01-02-03/QC-13112023_MW2.csv
@@ -0,0 +1,7 @@
+,well,qc1.rseal,qc1.cm,qc1.rseries,qc2.raw,qc2.subtracted,qc3.raw,qc3.E4031,qc3.subtracted,qc4.rseal,qc4.cm,qc4.rseries,qc5.staircase,qc5.1.staircase,qc6.subtracted,qc6.1.subtracted,qc6.2.subtracted,protocol,qc3.bookend,QC.Erev.all_protocols,QC.Erev.spread,QC1.all_protocols,QC4.all_protocols,QC6.all_protocols
+0,A01,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,staircaseramp,True,True,True,True,True,True
+1,A02,True,True,True,True,True,True,False,True,True,True,True,True,True,True,True,True,staircaseramp,True,True,True,True,True,True
+2,A03,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,staircaseramp,True,True,True,True,True,True
+3,A01,True,True,False,True,True,True,False,True,False,True,True,True,True,True,True,True,staircaseramp_2,True,True,True,True,True,True
+4,A02,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,staircaseramp_2,True,True,True,True,True,True
+5,A03,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,True,staircaseramp_2,True,True,True,True,True,True
diff --git a/output-A01-02-03/QC-13112023_MW2.json b/output-A01-02-03/QC-13112023_MW2.json
@@ -0,0 +1 @@
+[{"well":"A01","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A02","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":false,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A03","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A01","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":false,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":false,"qc3.subtracted":true,"qc4.rseal":false,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp_2","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A02","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp_2","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A03","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp_2","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true}]
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc5_1.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc5_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc6_0.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc6_0.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc6_1.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc6_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc6_2.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc6_2.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc_debug.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp/qc_debug.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc5_1.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc5_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc6_0.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc6_0.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc6_1.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc6_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc6_2.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc6_2.png
diff --git a/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc_debug.png b/output-A01-02-03/QC/debug/debug_A01_staircaseramp_2/qc_debug.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc5_1.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc5_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc6_0.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc6_0.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc6_1.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc6_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc6_2.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc6_2.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc_debug.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp/qc_debug.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc5_1.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc5_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc6_0.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc6_0.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc6_1.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc6_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc6_2.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc6_2.png
diff --git a/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc_debug.png b/output-A01-02-03/QC/debug/debug_A02_staircaseramp_2/qc_debug.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc5_1.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc5_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc6_0.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc6_0.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc6_1.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc6_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc6_2.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc6_2.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc_debug.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp/qc_debug.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc5_1.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc5_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc6_0.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc6_0.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc6_1.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc6_1.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc6_2.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc6_2.png
diff --git a/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc_debug.png b/output-A01-02-03/QC/debug/debug_A03_staircaseramp_2/qc_debug.png
diff --git a/output-A01-02-03/QC/leak_correction/A01-sweep0-after.png b/output-A01-02-03/QC/leak_correction/A01-sweep0-after.png
diff --git a/output-A01-02-03/QC/leak_correction/A01-sweep0-before.png b/output-A01-02-03/QC/leak_correction/A01-sweep0-before.png
diff --git a/output-A01-02-03/QC/leak_correction/A01-sweep1-after.png b/output-A01-02-03/QC/leak_correction/A01-sweep1-after.png
diff --git a/output-A01-02-03/QC/leak_correction/A01-sweep1-before.png b/output-A01-02-03/QC/leak_correction/A01-sweep1-before.png
diff --git a/output-A01-02-03/QC/leak_correction/A02-sweep0-after.png b/output-A01-02-03/QC/leak_correction/A02-sweep0-after.png
diff --git a/output-A01-02-03/QC/leak_correction/A02-sweep0-before.png b/output-A01-02-03/QC/leak_correction/A02-sweep0-before.png
diff --git a/output-A01-02-03/QC/leak_correction/A02-sweep1-after.png b/output-A01-02-03/QC/leak_correction/A02-sweep1-after.png
diff --git a/output-A01-02-03/QC/leak_correction/A02-sweep1-before.png b/output-A01-02-03/QC/leak_correction/A02-sweep1-before.png
diff --git a/output-A01-02-03/QC/leak_correction/A03-sweep0-after.png b/output-A01-02-03/QC/leak_correction/A03-sweep0-after.png
diff --git a/output-A01-02-03/QC/leak_correction/A03-sweep0-before.png b/output-A01-02-03/QC/leak_correction/A03-sweep0-before.png
diff --git a/output-A01-02-03/QC/leak_correction/A03-sweep1-after.png b/output-A01-02-03/QC/leak_correction/A03-sweep1-after.png
diff --git a/output-A01-02-03/QC/leak_correction/A03-sweep1-before.png b/output-A01-02-03/QC/leak_correction/A03-sweep1-before.png
diff --git a/output-A01-02-03/chrono.txt b/output-A01-02-03/chrono.txt
@@ -0,0 +1,2 @@
+staircaseramp
+staircaseramp_2
diff --git a/...V time constant/log10_single_exp_staircaseramp-A03-sweep0-time-constant-fit.png b/...V time constant/log10_single_exp_staircaseramp-A03-sweep0-time-constant-fit.png
diff --git a/...V time constant/log10_single_exp_staircaseramp-A03-sweep1-time-constant-fit.png b/...V time constant/log10_single_exp_staircaseramp-A03-sweep1-time-constant-fit.png
diff --git a/...time constant/log10_single_exp_staircaseramp_2-A03-sweep0-time-constant-fit.png b/...time constant/log10_single_exp_staircaseramp_2-A03-sweep0-time-constant-fit.png
diff --git a/...time constant/log10_single_exp_staircaseramp_2-A03-sweep1-time-constant-fit.png b/...time constant/log10_single_exp_staircaseramp_2-A03-sweep1-time-constant-fit.png
diff --git a/...debug/-120mV time constant/log10_staircaseramp-A03-sweep0-time-constant-fit.png b/...debug/-120mV time constant/log10_staircaseramp-A03-sweep0-time-constant-fit.png
diff --git a/...debug/-120mV time constant/log10_staircaseramp-A03-sweep1-time-constant-fit.png b/...debug/-120mV time constant/log10_staircaseramp-A03-sweep1-time-constant-fit.png
diff --git a/...bug/-120mV time constant/log10_staircaseramp_2-A03-sweep0-time-constant-fit.png b/...bug/-120mV time constant/log10_staircaseramp_2-A03-sweep0-time-constant-fit.png
diff --git a/...bug/-120mV time constant/log10_staircaseramp_2-A03-sweep1-time-constant-fit.png b/...bug/-120mV time constant/log10_staircaseramp_2-A03-sweep1-time-constant-fit.png
diff --git a/.../-120mV time constant/single_exp_staircaseramp-A03-sweep0-time-constant-fit.png b/.../-120mV time constant/single_exp_staircaseramp-A03-sweep0-time-constant-fit.png
diff --git a/.../-120mV time constant/single_exp_staircaseramp-A03-sweep1-time-constant-fit.png b/.../-120mV time constant/single_exp_staircaseramp-A03-sweep1-time-constant-fit.png
diff --git a/...120mV time constant/single_exp_staircaseramp_2-A03-sweep0-time-constant-fit.png b/...120mV time constant/single_exp_staircaseramp_2-A03-sweep0-time-constant-fit.png
diff --git a/...120mV time constant/single_exp_staircaseramp_2-A03-sweep1-time-constant-fit.png b/...120mV time constant/single_exp_staircaseramp_2-A03-sweep1-time-constant-fit.png
diff --git a/...02-03/debug/-120mV time constant/staircaseramp-A03-sweep0-time-constant-fit.png b/...02-03/debug/-120mV time constant/staircaseramp-A03-sweep0-time-constant-fit.png
diff --git a/...02-03/debug/-120mV time constant/staircaseramp-A03-sweep1-time-constant-fit.png b/...02-03/debug/-120mV time constant/staircaseramp-A03-sweep1-time-constant-fit.png
diff --git a/...-03/debug/-120mV time constant/staircaseramp_2-A03-sweep0-time-constant-fit.png b/...-03/debug/-120mV time constant/staircaseramp_2-A03-sweep0-time-constant-fit.png
diff --git a/...-03/debug/-120mV time constant/staircaseramp_2-A03-sweep1-time-constant-fit.png b/...-03/debug/-120mV time constant/staircaseramp_2-A03-sweep1-time-constant-fit.png
diff --git a/...02-03/leak_correction/13112023_MW2-staircaseramp-leak_fit-before/A03_sweep0.png b/...02-03/leak_correction/13112023_MW2-staircaseramp-leak_fit-before/A03_sweep0.png
diff --git a/...-03/leak_correction/13112023_MW2-staircaseramp_2-leak_fit-before/A03_sweep0.png b/...-03/leak_correction/13112023_MW2-staircaseramp_2-leak_fit-before/A03_sweep0.png
diff --git a/output-A01-02-03/passed_wells.txt b/output-A01-02-03/passed_wells.txt
@@ -0,0 +1 @@
+A03
diff --git a/output-A01-02-03/pcpostprocess_info.txt b/output-A01-02-03/pcpostprocess_info.txt
@@ -0,0 +1,6 @@
+pcpostprocess output https://github.com/CardiacModelling/pcpostprocess
+Date: 2025-11-11 19:14:30.965658
+Version: 0.2.1.dev1
+Build type: Develop
+Commit: g62a0bd564
+Command: pcpostprocess run_herg_qc tests/test_data/13112023_MW2_FF -w A01 A02 A03
diff --git a/output-A01-02-03/qc3_bookend.png b/output-A01-02-03/qc3_bookend.png
diff --git a/output-A01-02-03/qc_table.tex b/output-A01-02-03/qc_table.tex
@@ -0,0 +1,75 @@
+\begin{tabular}{llrl}
+\toprule
+ & crit & wells failing & protocol \\
+\midrule
+0 & QC.Erev.all\_protocols & 384 & staircaseramp1 \\
+1 & QC.Erev.spread & 384 & staircaseramp1 \\
+2 & QC1.all\_protocols & 384 & staircaseramp1 \\
+3 & QC4.all\_protocols & 384 & staircaseramp1 \\
+4 & QC6.all\_protocols & 384 & staircaseramp1 \\
+5 & qc1.cm & 384 & staircaseramp1 \\
+6 & qc1.rseal & 384 & staircaseramp1 \\
+7 & qc1.rseries & 384 & staircaseramp1 \\
+8 & qc2.raw & 384 & staircaseramp1 \\
+9 & qc2.subtracted & 384 & staircaseramp1 \\
+10 & qc3.E4031 & 384 & staircaseramp1 \\
+11 & qc3.bookend & 384 & staircaseramp1 \\
+12 & qc3.raw & 384 & staircaseramp1 \\
+13 & qc3.subtracted & 384 & staircaseramp1 \\
+14 & qc4.cm & 384 & staircaseramp1 \\
+15 & qc4.rseal & 384 & staircaseramp1 \\
+16 & qc4.rseries & 384 & staircaseramp1 \\
+17 & qc5.1.staircase & 384 & staircaseramp1 \\
+18 & qc5.staircase & 384 & staircaseramp1 \\
+19 & qc6.1.subtracted & 384 & staircaseramp1 \\
+20 & qc6.2.subtracted & 384 & staircaseramp1 \\
+21 & qc6.subtracted & 384 & staircaseramp1 \\
+22 & all & 384 & staircaseramp1 \\
+23 & QC.Erev.all\_protocols & 384 & staircaseramp1_2 \\
+24 & QC.Erev.spread & 384 & staircaseramp1_2 \\
+25 & QC1.all\_protocols & 384 & staircaseramp1_2 \\
+26 & QC4.all\_protocols & 384 & staircaseramp1_2 \\
+27 & QC6.all\_protocols & 384 & staircaseramp1_2 \\
+28 & qc1.cm & 384 & staircaseramp1_2 \\
+29 & qc1.rseal & 384 & staircaseramp1_2 \\
+30 & qc1.rseries & 384 & staircaseramp1_2 \\
+31 & qc2.raw & 384 & staircaseramp1_2 \\
+32 & qc2.subtracted & 384 & staircaseramp1_2 \\
+33 & qc3.E4031 & 384 & staircaseramp1_2 \\
+34 & qc3.bookend & 384 & staircaseramp1_2 \\
+35 & qc3.raw & 384 & staircaseramp1_2 \\
+36 & qc3.subtracted & 384 & staircaseramp1_2 \\
+37 & qc4.cm & 384 & staircaseramp1_2 \\
+38 & qc4.rseal & 384 & staircaseramp1_2 \\
+39 & qc4.rseries & 384 & staircaseramp1_2 \\
+40 & qc5.1.staircase & 384 & staircaseramp1_2 \\
+41 & qc5.staircase & 384 & staircaseramp1_2 \\
+42 & qc6.1.subtracted & 384 & staircaseramp1_2 \\
+43 & qc6.2.subtracted & 384 & staircaseramp1_2 \\
+44 & qc6.subtracted & 384 & staircaseramp1_2 \\
+45 & all & 384 & staircaseramp1_2 \\
+46 & QC.Erev.all\_protocols & 381 & all \\
+47 & QC.Erev.spread & 381 & all \\
+48 & QC1.all\_protocols & 381 & all \\
+49 & QC4.all\_protocols & 381 & all \\
+50 & QC6.all\_protocols & 381 & all \\
+51 & qc1.cm & 381 & all \\
+52 & qc1.rseal & 381 & all \\
+53 & qc1.rseries & 382 & all \\
+54 & qc2.raw & 381 & all \\
+55 & qc2.subtracted & 381 & all \\
+56 & qc3.E4031 & 383 & all \\
+57 & qc3.bookend & 381 & all \\
+58 & qc3.raw & 381 & all \\
+59 & qc3.subtracted & 381 & all \\
+60 & qc4.cm & 381 & all \\
+61 & qc4.rseal & 382 & all \\
+62 & qc4.rseries & 381 & all \\
+63 & qc5.1.staircase & 381 & all \\
+64 & qc5.staircase & 381 & all \\
+65 & qc6.1.subtracted & 381 & all \\
+66 & qc6.2.subtracted & 381 & all \\
+67 & qc6.subtracted & 381 & all \\
+68 & all & 383 & all \\
+\bottomrule
+\end{tabular}
diff --git a/output-A01-02-03/qc_vals_df.csv b/output-A01-02-03/qc_vals_df.csv
@@ -0,0 +1,5 @@
+,well,sweep,protocol,Rseal,Cm,Rseries,drug
+0,A03,0,staircaseramp,3251069000.0,1.58413e-11,9491014.0,before
+1,A03,1,staircaseramp,2147978000.0,1.562104e-11,10209700.0,before
+2,A03,0,staircaseramp_2,1926283000.0,1.544289e-11,14282480.0,before
+3,A03,1,staircaseramp_2,2370252000.0,1.549668e-11,14658470.0,before
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep0_after.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep0_after.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep0_before.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep0_before.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep0_subtracted.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep0_subtracted.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep1_after.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep1_after.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep1_before.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep1_before.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep1_subtracted.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_2_sweep1_subtracted.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep0_after.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep0_after.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep0_before.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep0_before.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep0_subtracted.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep0_subtracted.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep1_after.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep1_after.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep1_before.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep1_before.png
diff --git a/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep1_subtracted.png b/output-A01-02-03/reversal_plots/A03_staircaseramp_sweep1_subtracted.png
diff --git a/output-A01-02-03/selected-13112023_MW2-staircaseramp.txt b/output-A01-02-03/selected-13112023_MW2-staircaseramp.txt
@@ -0,0 +1,2 @@
+A01
+A03
diff --git a/output-A01-02-03/selected-13112023_MW2-staircaseramp_2.txt b/output-A01-02-03/selected-13112023_MW2-staircaseramp_2.txt
@@ -0,0 +1,2 @@
+A02
+A03
diff --git a/output-A01-02-03/selected-13112023_MW2.txt b/output-A01-02-03/selected-13112023_MW2.txt
@@ -0,0 +1 @@
+A03
diff --git a/...1-02-03/subtraction_plots/13112023_MW2-staircaseramp-A03-sweep1-subtraction.png b/...1-02-03/subtraction_plots/13112023_MW2-staircaseramp-A03-sweep1-subtraction.png
diff --git a/...02-03/subtraction_plots/13112023_MW2-staircaseramp_2-A03-sweep1-subtraction.png b/...02-03/subtraction_plots/13112023_MW2-staircaseramp_2-A03-sweep1-subtraction.png
diff --git a/output-A01-02-03/subtraction_qc.csv b/output-A01-02-03/subtraction_qc.csv
@@ -0,0 +1,5 @@
+,well,sweep,protocol,Rseal,Cm,Rseries,gleak_before,E_leak_before,gleak_after,E_leak_after,R_leftover,QC.R_leftover,E_rev,E_rev_before,E_rev_after,QC.Erev,QC6,QC1,QC4,total before-drug flux,-120mV decay time constant 1,-120mV decay time constant 2,-120mV decay time constant 3,-120mV peak current,selected,passed QC,QC.Erev.spread,Erev_spread
+0,A03,0,staircaseramp,3251069000.0,1.58413e-11,9491014.0,0.7345540279467161,-41.11296239757151,0.9292715112232074,-36.35961095388226,0.044808758916029555,True,-90.74636825355324,-89.57184330525791,-90.46261999707305,True,True,True,True,13417254.586416585,423.55885203652065,71.82414041774116,150.70295323575797,-1075.5094804921903,True,True,True,4.098624786642645
+1,A03,1,staircaseramp,2147978000.0,1.562104e-11,10209700.0,0.9845611824103958,-51.21174064515182,0.861911246447718,-30.60948333569417,0.038060764451836704,True,-89.76593328516874,-88.78531328677197,-89.32779687598776,True,True,True,True,12183648.28399348,440.9616039464997,73.5634737690446,143.9558795562062,-1152.424836140228,True,True,True,4.098624786642645
+2,A03,0,staircaseramp_2,1926283000.0,1.544289e-11,14282480.0,1.1250840677620342,-46.81841555131943,0.5471111435993272,4.754107315054811,0.06006057073340253,True,-86.6477434669106,-86.22510795506395,-89.72640336003438,True,True,True,True,10316908.244699527,1191.6366433328076,109.20554617484457,141.95139511565844,-1130.521284568172,True,True,True,4.098624786642645
+3,A03,1,staircaseramp_2,2370252000.0,1.549668e-11,14658470.0,1.003906784107606,-50.44391131252602,0.63325056494211,-8.35982927025947,0.03902533267577489,True,-86.98800582291979,-86.60847454282448,-86.78936448947643,True,True,True,True,10509043.280135067,550.4521873798012,101.18062180974883,151.6599318592011,-1104.2562689779716,True,True,True,4.098624786642645
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		[{"well":"A01","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A02","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":false,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A03","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A01","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":false,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":false,"qc3.subtracted":true,"qc4.rseal":false,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp_2","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A02","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp_2","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true},{"well":"A03","qc1.rseal":true,"qc1.cm":true,"qc1.rseries":true,"qc2.raw":true,"qc2.subtracted":true,"qc3.raw":true,"qc3.E4031":true,"qc3.subtracted":true,"qc4.rseal":true,"qc4.cm":true,"qc4.rseries":true,"qc5.staircase":true,"qc5.1.staircase":true,"qc6.subtracted":true,"qc6.1.subtracted":true,"qc6.2.subtracted":true,"protocol":"staircaseramp_2","qc3.bookend":true,"QC.Erev.all_protocols":true,"QC.Erev.spread":true,"QC1.all_protocols":true,"QC4.all_protocols":true,"QC6.all_protocols":true}]