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warrenlrwarrenlr
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update aahash
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‎_includes/software-content.html‎

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<tr><td colspan="3" style="background-color:#DCEEFF; padding:10px; font-weight:bold; font-size:20px; color:black;">Utilities</td></tr>
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<td class="software-cell" onclick="window.open('https://github.com/birollab/btllib', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title" style="white-space:nowrap;">aaHash <a href="https://github.com/birollab/btllib"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Hashing algorithm for amino acid sequences</p></td><td class="software-cell" onclick="window.open('https://github.com/birollab/biobloom', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title" style="white-space:nowrap;">BioBloomTools <a href="https://github.com/birollab/biobloom"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include linuxbrew-icon.html%} brew install brewsci/bio/biobloomtools</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda biobloomtools</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/biobloomtools</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Sequence read mapping w/Bloom filters</p></td><td class="software-cell" onclick="window.open('https://github.com/birollab/btllib', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/btllib.png"><span class="software-title" style="white-space:nowrap;">btllib <a href="https://github.com/birollab/btllib"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda btllib</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/btllib</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Sequence processing C++ library, with Python API</p></td></tr>
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<td class="software-cell" onclick="window.open('https://github.com/birollab/btllib', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/btllib.png"><span class="software-title" style="white-space:nowrap;">aaHash <a href="https://github.com/birollab/btllib"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda btllib</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/btllib</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Hashing algorithm for amino acid sequences</p></td><td class="software-cell" onclick="window.open('https://github.com/birollab/biobloom', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/transparent.png"><span class="software-title" style="white-space:nowrap;">BioBloomTools <a href="https://github.com/birollab/biobloom"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include linuxbrew-icon.html%} brew install brewsci/bio/biobloomtools</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda biobloomtools</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/biobloomtools</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Sequence read mapping w/Bloom filters</p></td><td class="software-cell" onclick="window.open('https://github.com/birollab/btllib', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/btllib.png"><span class="software-title" style="white-space:nowrap;">btllib <a href="https://github.com/birollab/btllib"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda btllib</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/btllib</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Sequence processing C++ library, with Python API</p></td></tr>
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<td class="software-cell" onclick="window.open('https://github.com/birollab/MAP', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/map-logo.png"><span class="software-title" style="white-space:nowrap;">MAP <a href="https://github.com/birollab/MAP"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Microdilution Assay Processor</p></td><td class="software-cell" onclick="window.open('https://github.com/birollab/NanoSim', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/nanosimlogo.png"><span class="software-title" style="white-space:nowrap;">NanoSim <a href="https://github.com/birollab/NanoSim"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">&nbsp;</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda nanosim</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/nanosim</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">Nanopore sequence simulator</p></td><td class="software-cell" onclick="window.open('https://github.com/birollab/ntCard', '_blank')" style="vertical-align:top; padding:6px; word-break:break-word; overflow-wrap:anywhere;"><img class="software-logo" src="assets/logos/ntCardlogo.png"><span class="software-title" style="white-space:nowrap;">ntCard <a href="https://github.com/birollab/ntCard"><img class="git" src="assets/githubicon.svg"></a></span><div style="text-align:center; margin-top:4px;"><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include linuxbrew-icon.html%} brew install brewsci/bio/ntcard</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include bioconda-icon.html%} conda install -c bioconda ntcard</div><div style="font-size:12px; font-family:monospace; height:18px; line-height:18px; white-space:nowrap;">{% include docker-icon.html%} docker run quay.io/biocontainers/ntcard</div></div><p style="padding-top:4px; margin:0; font-weight:bold;">k-mer cardinality estimation in genomics datasets</p></td></tr>
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‎assets/.DS_Store‎

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‎softwareblurbs/aahash.txt‎

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btllib.png
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aaHash
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https://github.com/birollab/btllib
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conda install -c bioconda btllib
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docker run quay.io/biocontainers/btllib
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Hashing algorithm for amino acid sequences
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Utilities

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