update tool section

warrenlr · warrenlr · commit cfab83302843 · 2026-03-26T13:54:16.000-07:00
diff --git a/_includes/software-content.html b/_includes/software-content.html
diff --git a/softwareblurbs/abyssexplorer.txt b/softwareblurbs/abyssexplorer.txt
@@ -5,4 +5,4 @@ brew install brewsci/bio/abyss-explorer
 
 
 Visual exploration of genome sequence assemblies
-< Legacy >
+Vintage
diff --git a/softwareblurbs/chopstitch.txt b/softwareblurbs/chopstitch.txt
@@ -5,4 +5,4 @@ https://github.com/birollab/ChopStitch
 
 
 De novo exon prediction and splice graph
-Legacy
+Vintage
diff --git a/softwareblurbs/dida.txt b/softwareblurbs/dida.txt
@@ -5,4 +5,4 @@ brew install brewsci/bio/dida
 
 
 Distribution of sequence indexing/alignments
-Legacy
+Vintage
diff --git a/softwareblurbs/gappredict.txt b/softwareblurbs/gappredict.txt
@@ -5,4 +5,4 @@ https://github.com/birollab/GapPredict
 
 
 LSTM model for genome gap filling
-Legacy
+Vintage
diff --git a/softwareblurbs/kollector.txt b/softwareblurbs/kollector.txt
@@ -5,4 +5,4 @@ brew install brewsci/science/kollector
 
 
 Targeted de novo gene assembly pipeline
-Legacy
+Vintage
diff --git a/softwareblurbs/nthits.txt b/softwareblurbs/nthits.txt
@@ -5,4 +5,4 @@ brew install brewsci/bio/nthits
 conda install -c bioconda nthits
 docker run quay.io/biocontainers/nthits
 Repeat k-mer identification in DNA sequencing data
-Legacy
+Vintage
diff --git a/softwareblurbs/pavfinder.txt b/softwareblurbs/pavfinder.txt
@@ -5,4 +5,4 @@ https://github.com/birollab/pavfinder
 conda install -c bioconda pavfinder
 docker run quay.io/biocontainers/pavfinder
 Structural variants identification
-Legacy
+Vintage
diff --git a/softwareblurbs/ssake.txt b/softwareblurbs/ssake.txt
@@ -5,4 +5,4 @@ https://github.com/birollab/SSAKE
 conda install -c bioconda ssake
 docker run quay.io/biocontainers/ssake
 Short read genome assembler
-Legacy
+Vintage
diff --git a/softwareblurbs/tasr.txt b/softwareblurbs/tasr.txt
@@ -5,4 +5,4 @@ https://github.com/birollab/TASR
 
 
 Targeted Assembly of Sequence Reads
-Legacy
+Vintage
diff --git a/softwareblurbs/transabyss.txt b/softwareblurbs/transabyss.txt
@@ -5,4 +5,4 @@ brew install brewsci/science/trans-abyss
 conda install transabyss
 docker run quay.io/biocontainers/transabyss
 De novo transcriptome assembler with short reads 
-Legacy
+Vintage
diff --git a/softwareblurbs/xmatchview.txt b/softwareblurbs/xmatchview.txt
@@ -5,4 +5,4 @@ brew install brewsci/bio/xmatchview
 conda install -c bioconda xmatchview
 docker run quay.io/biocontainers/xmatchview
 Genome sequence alignment/synteny visualization
-Legacy
+Vintage

Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,4 @@ brew install brewsci/bio/abyss-explorer`
`5`	`5`
`6`	`6`
`7`	`7`	`Visual exploration of genome sequence assemblies`
`8`		`-< Legacy >`
	`8`	`+Vintage`
Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,4 @@ https://github.com/birollab/ChopStitch`
`5`	`5`
`6`	`6`
`7`	`7`	`De novo exon prediction and splice graph`
`8`		`-Legacy`
	`8`	`+Vintage`
Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,4 @@ brew install brewsci/bio/dida`
`5`	`5`
`6`	`6`
`7`	`7`	`Distribution of sequence indexing/alignments`
`8`		`-Legacy`
	`8`	`+Vintage`
Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,4 @@ https://github.com/birollab/GapPredict`
`5`	`5`
`6`	`6`
`7`	`7`	`LSTM model for genome gap filling`
`8`		`-Legacy`
	`8`	`+Vintage`
Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,4 @@ brew install brewsci/science/kollector`
`5`	`5`
`6`	`6`
`7`	`7`	`Targeted de novo gene assembly pipeline`
`8`		`-Legacy`
	`8`	`+Vintage`
Original file line number	Diff line number	Diff line change
`@@ -5,4 +5,4 @@ https://github.com/birollab/TASR`
`5`	`5`
`6`	`6`
`7`	`7`	`Targeted Assembly of Sequence Reads`
`8`		`-Legacy`
	`8`	`+Vintage`