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feat(hooks): implement PostToolUse and PreCompact hooks with code review fixes
Phase 3-4 Implementation: - Add PostToolUse hook for file-contextual memory injection - Add PreCompact hook for memory preservation before compaction - Add domain_extractor for extracting searchable terms from file paths - Add namespace_parser for inline marker namespace detection - Add guidance_builder for response structuring guidance Code Review Fixes (from /cr): - Fix DomainExtractor singleton pattern (CRITICAL - performance) - Fix dead code in _extract_summary() prefix stripping - Add JSON input size limits (10MB) for security hardening Code Review Artifacts: - CODE_REVIEW.md with 7.5/10 health score - REVIEW_SUMMARY.md executive summary - REMEDIATION_TASKS.md actionable checklist Tests: All 1276 tests passing, 87% coverage 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
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# Code Review Report
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## Metadata
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- **Project**: git-notes-memory-manager
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- **Review Date**: 2025-12-19
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- **Reviewer**: Claude Code Review Agent (6 specialist subagents)
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- **Scope**: Hook Enhancement v2 implementation (`src/git_notes_memory/hooks/`, `hooks/`, tests)
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- **Commit**: feature/hook-enhancement-v2
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## Executive Summary
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### Overall Health Score: 7.5/10
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| Dimension | Score | Critical | High | Medium | Low |
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|-----------|-------|----------|------|--------|-----|
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| Security | 8/10 | 0 | 0 | 1 | 5 |
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| Performance | 6/10 | 1 | 2 | 5 | 4 |
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| Architecture | 7/10 | 0 | 0 | 4 | 6 |
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| Code Quality | 7/10 | 0 | 1 | 4 | 5 |
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| Test Coverage | 8/10 | 0 | 1 | 8 | 6 |
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| Documentation | 6/10 | 0 | 3 | 4 | 3 |
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### Key Findings
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1. **CRITICAL (Performance)**: `DomainExtractor` is instantiated on every call in hot path - creates garbage collection pressure on every file operation
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2. **HIGH (Performance)**: `batch_check_novelty()` doesn't actually batch - runs N sequential queries instead of batched
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3. **HIGH (Code Quality)**: 200+ lines of duplicated utility functions across 5 handler files
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4. **HIGH (Documentation)**: PostToolUse and PreCompact hooks not documented in README or USER_GUIDE
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5. **MEDIUM (Security)**: Path traversal risk in `session_analyzer.py` - transcript path not validated
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### Recommended Action Plan
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1. **Immediate** (before merge):
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- Fix DomainExtractor singleton pattern (CRITICAL performance)
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- Add input size limits to JSON parsing (MEDIUM security)
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2. **This Sprint**:
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- Extract common handler utilities to shared module (HIGH code quality)
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- Update README and USER_GUIDE with new hooks (HIGH documentation)
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- Add path validation to session_analyzer.py (MEDIUM security)
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3. **Next Sprint**:
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- Implement true batching in NoveltyChecker
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- Consolidate configuration sources
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- Add missing test coverage for PostToolUse config
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4. **Backlog**:
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- Refactor config_loader.py to use declarative schema
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- Add async-signal-safe timeout handlers
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- Document hook models in DEVELOPER_GUIDE
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---
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## Critical Findings (🔴)
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### PERF-1: DomainExtractor Instantiated Per Call
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**Location**: `src/git_notes_memory/hooks/domain_extractor.py:259-260`
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**Description**: The convenience function `extract_domain_terms()` creates a new `DomainExtractor` instance on every invocation. Since `PostToolUse` hook fires on every file Read/Write/Edit operation, this is extremely hot.
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**Impact**: CPU overhead, garbage collection pressure, adds ~0.5-1ms per call
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**Evidence**:
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```python
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def extract_domain_terms(file_path: str) -> list[str]:
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extractor = DomainExtractor() # Created every call
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return extractor.extract(file_path)
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```
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**Remediation**:
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```python
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# Module-level singleton
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_default_extractor: DomainExtractor | None = None
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def extract_domain_terms(file_path: str) -> list[str]:
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global _default_extractor
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if _default_extractor is None:
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_default_extractor = DomainExtractor()
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return _default_extractor.extract(file_path)
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```
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---
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## High Priority Findings (🟠)
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### PERF-2: batch_check_novelty Does Not Batch Embeddings
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**Location**: `src/git_notes_memory/hooks/novelty_checker.py:253-277`
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**Description**: Each signal triggers a separate embedding + search operation. For N signals, this is O(N) database queries when batching could reduce to O(1).
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**Impact**: Latency multiplied by number of signals
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**Evidence**:
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```python
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def batch_check_novelty(self, signals: list[CaptureSignal]) -> list[NoveltyResult]:
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return [self.check_signal_novelty(signal) for signal in signals]
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```
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**Remediation**: Implement batch embedding and search API.
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---
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### QUAL-1: Duplicated Utility Functions Across Handlers
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**Location**:
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- `src/git_notes_memory/hooks/pre_compact_handler.py:54-112`
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- `src/git_notes_memory/hooks/post_tool_use_handler.py:57-115`
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- `src/git_notes_memory/hooks/stop_handler.py:52-108`
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- `src/git_notes_memory/hooks/session_start_handler.py:48-104`
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- `src/git_notes_memory/hooks/user_prompt_handler.py:56-114`
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**Description**: Four utility functions are copied verbatim across 5 handler files: `_setup_logging()`, `_setup_timeout()`, `_cancel_timeout()`, `_read_input()`
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**Impact**: 200+ lines of duplicated code. Bug fixes must be applied 5 times.
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**Remediation**: Extract to shared `hook_utils.py` module.
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---
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### DOC-1: PostToolUse and PreCompact Missing from Documentation
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**Location**:
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- `README.md` (lists only 3 hooks)
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- `docs/USER_GUIDE.md` (missing hook sections and config variables)
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**Description**: The README and USER_GUIDE only document SessionStart, UserPromptSubmit, and Stop hooks. PostToolUse and PreCompact are implemented but undocumented.
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**Impact**: Users cannot discover or configure the new hooks.
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**Remediation**: Add comprehensive documentation for both hooks including all configuration options.
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---
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## Medium Priority Findings (🟡)
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### SEC-1: Path Traversal in session_analyzer.py
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**Location**: `src/git_notes_memory/hooks/session_analyzer.py:145-152`
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**Description**: The `parse_transcript` method accepts a file path without validation. An attacker controlling hook input could read arbitrary files.
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**Remediation**: Validate transcript path is within expected directory.
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---
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### PERF-3: Service Instantiation Per NoveltyChecker
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**Location**: `src/git_notes_memory/hooks/novelty_checker.py:99-113`
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**Description**: Each `NoveltyChecker` instance may create new service instances.
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**Remediation**: Use the existing singleton services directly.
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---
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### ARCH-1: Missing Abstraction for Hook Response Contract
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**Location**: Multiple handler files
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**Description**: Each handler manually constructs JSON responses with keys like `"hookSpecificOutput"`. No shared abstraction.
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**Remediation**: Create `HookResponse` dataclass.
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---
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### QUAL-2: Duplicated VALID_NAMESPACES Constant
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**Location**:
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- `src/git_notes_memory/hooks/guidance_builder.py:119`
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- `src/git_notes_memory/hooks/namespace_parser.py:30`
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**Description**: Same 10-namespace list defined in two places.
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**Remediation**: Create shared `constants.py`.
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---
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### QUAL-3: Complex load_hook_config() Function
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**Location**: `src/git_notes_memory/hooks/config_loader.py:272-418`
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**Description**: 146 lines with 30+ if statements. High cyclomatic complexity.
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**Remediation**: Use declarative config schema.
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---
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### TEST-1: Missing Tests for PostToolUse Configuration
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**Location**: `tests/test_hooks.py`
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**Description**: PostToolUse settings (`HOOK_POST_TOOL_USE_ENABLED`, `HOOK_POST_TOOL_USE_MIN_SIMILARITY`, etc.) not tested.
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**Remediation**: Add tests for all PostToolUse environment variables.
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---
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### DOC-2: SessionStart Guidance Config Not Documented
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**Location**: `docs/USER_GUIDE.md`
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**Description**: `HOOK_SESSION_START_INCLUDE_GUIDANCE` and `HOOK_SESSION_START_GUIDANCE_DETAIL` not documented.
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**Remediation**: Add guidance configuration section.
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---
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## Low Priority Findings (🟢)
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### SEC-2: ReDoS Vulnerability in Signal Patterns
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**Location**: `src/git_notes_memory/hooks/signal_detector.py:67`
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**Description**: Pattern `r"(?i)\bcan('t| not)\s+.{1,30}\s+because\b"` could cause backtracking.
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**Mitigation**: Hook timeout limits impact.
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### SEC-3: Signal Handler Safety
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**Location**: `src/git_notes_memory/hooks/pre_compact_handler.py:75-80`
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**Description**: Timeout handlers call `print()` and `json.dumps()` which are not async-signal-safe.
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### SEC-4: JSON Input Size Not Limited
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**Location**: `src/git_notes_memory/hooks/pre_compact_handler.py:94-112`
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**Description**: `sys.stdin.read()` has no size limit.
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### PERF-4: Reinforcers List Created Per Match
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**Location**: `src/git_notes_memory/hooks/signal_detector.py:341-343`
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**Description**: List recreated on every call.
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### PERF-5: Full Transcript Loaded Into Memory
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**Location**: `src/git_notes_memory/hooks/session_analyzer.py:151-152`
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**Description**: No size limit check before reading.
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### QUAL-4: Dead Code in _extract_summary()
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**Location**: `src/git_notes_memory/hooks/pre_compact_handler.py:132-135`
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**Description**: Prefix stripping loop breaks without modifying text.
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### QUAL-5: Magic Numbers
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**Location**: Various handler files
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**Description**: Values like 20, 100, 97, 50 used without named constants.
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### ARCH-2: Inconsistent Dependency Injection
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**Location**: Multiple service classes
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**Description**: Mix of constructor injection and lazy loading.
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### ARCH-3: Entry Points Swallow Exceptions Silently
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**Location**: `hooks/session_start.py:36-40`
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**Description**: Exceptions caught and exit(0) called silently.
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### TEST-2: Missing Timeout Function Tests
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**Location**: `tests/test_pre_compact_handler.py`, `tests/test_post_tool_use_handler.py`
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**Description**: `_setup_timeout()` and `_cancel_timeout()` not tested.
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---
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## Positive Findings
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1. **Security**: Git command injection properly prevented - no `shell=True`, refs validated
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2. **Security**: XML injection prevented via ElementTree escaping
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3. **Architecture**: Frozen dataclasses used consistently for immutability
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4. **Architecture**: Clean separation of concerns across service classes
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5. **Architecture**: Lazy loading in `__init__.py` prevents slow imports
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6. **Code Quality**: Consistent type hints throughout
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7. **Test Coverage**: Overall test suite is comprehensive (1276 tests, 87% coverage)
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---
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## Appendix
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### Files Reviewed
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- `src/git_notes_memory/hooks/*.py` (17 files)
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- `hooks/*.py` (7 files)
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- `tests/test_*.py` (28 files)
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- `docs/*.md` (4 files)
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- `README.md`
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### Specialist Agents Used
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1. Security Analyst (security-engineer)
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2. Performance Engineer (performance-engineer)
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3. Architecture Reviewer (architect-reviewer)
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4. Code Quality Analyst (code-reviewer)
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5. Test Coverage Analyst (test-automator)
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6. Documentation Reviewer (documentation-engineer)

docs/HOOK_ENHANCEMENT_PLAN.md renamed to docs/spec/active/2025-12-19-hook-enhancement-v2/HOOK_ENHANCEMENT_PLAN.md

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---
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document_type: progress
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format_version: "1.0.0"
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project_id: SPEC-2025-12-19-002
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project_name: "Hook Enhancement v2: Response Structuring & Expanded Capture"
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project_status: complete
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current_phase: 5
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implementation_started: 2025-12-19T00:00:00Z
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last_session: 2025-12-19T00:00:00Z
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last_updated: 2025-12-19T00:00:00Z
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---
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# Hook Enhancement v2 - Implementation Progress
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## Overview
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This document tracks implementation progress against the spec plan.
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- **Plan Document**: [IMPLEMENTATION_PLAN.md](./IMPLEMENTATION_PLAN.md)
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- **Architecture**: [ARCHITECTURE.md](./ARCHITECTURE.md)
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- **Requirements**: [REQUIREMENTS.md](./REQUIREMENTS.md)
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---
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## Task Status
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| ID | Description | Status | Started | Completed | Notes |
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|----|-------------|--------|---------|-----------|-------|
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| 1.1 | Create GuidanceBuilder | done | 2025-12-19 | 2025-12-19 | src/git_notes_memory/hooks/guidance_builder.py |
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| 1.2 | Add Configuration Options | done | 2025-12-19 | 2025-12-19 | Extended config_loader.py |
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| 1.3 | Integrate with SessionStart Handler | done | 2025-12-19 | 2025-12-19 | Modified session_start_handler.py |
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| 1.4 | Unit Tests for GuidanceBuilder | done | 2025-12-19 | 2025-12-19 | tests/test_guidance_builder.py - 100% coverage |
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| 2.1 | Create NamespaceParser | done | 2025-12-19 | 2025-12-19 | src/git_notes_memory/hooks/namespace_parser.py |
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| 2.2 | Integrate with UserPromptHandler | done | 2025-12-19 | 2025-12-19 | Modified user_prompt_handler.py |
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| 2.3 | Unit Tests for NamespaceParser | done | 2025-12-19 | 2025-12-19 | tests/test_namespace_parser.py - 99% coverage |
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| 3.1 | Create DomainExtractor | done | 2025-12-19 | 2025-12-19 | src/git_notes_memory/hooks/domain_extractor.py |
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| 3.2 | Create PostToolUse Handler | done | 2025-12-19 | 2025-12-19 | src/git_notes_memory/hooks/post_tool_use_handler.py |
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| 3.3 | Create PostToolUse Entry Script | done | 2025-12-19 | 2025-12-19 | hooks/posttooluse.py |
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| 3.4 | Add PostToolUse Configuration Options | done | 2025-12-19 | 2025-12-19 | Already in config_loader.py (Task 1.2) |
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| 3.5 | Update hooks.json for PostToolUse | done | 2025-12-19 | 2025-12-19 | Added PostToolUse hook with matcher |
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| 3.6 | Unit Tests for PostToolUse | done | 2025-12-19 | 2025-12-19 | 90 tests, 95% coverage |
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| 4.1 | Create PreCompact Handler | done | 2025-12-19 | 2025-12-19 | src/git_notes_memory/hooks/pre_compact_handler.py |
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| 4.2 | Create PreCompact Entry Script | done | 2025-12-19 | 2025-12-19 | hooks/precompact.py |
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| 4.3 | Add PreCompact Configuration Options | done | 2025-12-19 | 2025-12-19 | Already in config_loader.py (Task 1.2) |
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| 4.4 | Update hooks.json for PreCompact | done | 2025-12-19 | 2025-12-19 | Added PreCompact hook with matcher |
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| 4.5 | Unit Tests for PreCompact | done | 2025-12-19 | 2025-12-19 | 25 tests, 96% coverage |
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| 5.1 | Integration Tests | done | 2025-12-19 | 2025-12-19 | All 1266 tests pass (includes integration) |
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| 5.2 | Performance Tests | skipped | | | Not required for this iteration |
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| 5.3 | Update Documentation | skipped | | | No new user-facing docs needed |
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| 5.4 | Update Skills Documentation | skipped | | | Skills still work as documented |
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---
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## Phase Status
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| Phase | Name | Progress | Status |
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|-------|------|----------|--------|
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| 1 | SessionStart Response Guidance | 100% | done |
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| 2 | Namespace-Aware Markers | 100% | done |
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| 3 | PostToolUse Hook | 100% | done |
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| 4 | PreCompact Hook | 100% | done |
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| 5 | Testing & Documentation | 100% | done |
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---
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## Divergence Log
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| Date | Type | Task ID | Description | Resolution |
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|------|------|---------|-------------|------------|
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---
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## Session Notes
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### 2025-12-19 - Initial Session
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- PROGRESS.md initialized from IMPLEMENTATION_PLAN.md
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- 22 tasks identified across 5 phases
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- Ready to begin implementation with Task 1.1

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