-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathmain_left_one.py
More file actions
557 lines (424 loc) · 21.1 KB
/
main_left_one.py
File metadata and controls
557 lines (424 loc) · 21.1 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
import os
import statistics
import mne
import argparse
import numpy as np
from torch.utils.data import TensorDataset, DataLoader,random_split
import torch.nn as nn
from sklearn.metrics import accuracy_score
import xgboost as xgb
# from keras.callbacks import EarlyStopping
from eutils.kflod import five_fold
import scipy
from models import *
from utils import *
import random
from preproc.util import list_data_split, normalize_data
from sklearn.model_selection import KFold
from sklearn.ensemble import AdaBoostClassifier
from sklearn.tree import DecisionTreeClassifier
from sklearn.ensemble import RandomForestClassifier
from sklearn.naive_bayes import GaussianNB
def set_seed(seed):
# 设置 Python 内置的随机数生成器的种子
random.seed(seed)
# 设置 NumPy 随机数生成器的种子
np.random.seed(seed)
# 设置 PyTorch 随机数生成器的种子
torch.manual_seed(seed)
# 如果使用 GPU
if torch.cuda.is_available():
torch.cuda.manual_seed(seed)
torch.cuda.manual_seed_all(seed) # 如果有多个 GPU
# 确保在 CUDA 上进行操作的确定性
torch.backends.cudnn.deterministic = True
torch.backends.cudnn.benchmark = False
# 调用函数设置随机种子
set_seed(520520)
time_len = 1
sampling_rate = 128
sample_len, channels_num = int(sampling_rate * time_len), 64
overlap_rate = 1
window_sliding = int(sample_len * time_len * overlap_rate)
freq_bands = [[1, 50]]
parser = argparse.ArgumentParser(description='eeg competition for CS')
parser.add_argument('--datadir', type=str, default='/root/autodl-tmp/kul', help='dir to the dataset or the validation set')
parser.add_argument('--opt', type=str, default='adam', help='optimizer [adam, sgd]')
parser.add_argument('--model', type=str, default='cnn_lstm',choices=['cacnn','cnn_lstm','gcn','resnet18','eegnet','eegnet_','eegnet_bnn','inception','deepnetwork','pyramidnet','XGBoost','AdaBoost','Decision_Tree','Random_Forest','Gaussian_Naive_Bayes'], help='model to train the dataset')
parser.add_argument('--subject_id',type =int,default=0)
parser.add_argument('--batch_size', type=int, default=128, help='train and val batch')
parser.add_argument('--epochs', type=int, default=50, help='epochs')
parser.add_argument('--savedir', type=str, default='./results', help='dir to the results')
parser.add_argument('--lr', type=float, default=0.01, help='initial learning rate for all weights')
parser.add_argument('--lr-type', type=str, default='cosine', help='learning rate strategy [cosine, multistep]')
parser.add_argument('--wd', type=float, default=1e-5, help='weight decay for all weights')
parser.add_argument('--momentum', type=float, default=0.9, help='momentum (default: 0.9)')
parser.add_argument('--print-freq', type=int, default=10, help='print frequency (default: 10)')
parser.add_argument('--save-freq', type=int, default=30, help='save frequency (default: 10)')
parser.add_argument('--label-smooth', type=float, default=0.1, help='label smoothing')
parser.add_argument('--warm-epoch', default=0, type=int, help='epoch number to warm up')
parser.add_argument('--evaluate', type=str, default=None, help="full path to checkpoint to be evaluated or 'best'")
parser.add_argument('--lr-steps', type=str, default="60-85", help='steps for multistep learning rate')
parser.add_argument('--lr-gammas', type=str, default=None, help='corresponding gammas for lr_steps to reduce lr')
args = parser.parse_args()
def preprocess_data_ten(sub_id, data_folder="DATA"):
"""
Preprocesses EEG data for a given subject, filtering and resampling the data according to specified frequency bands.
"""
data_path = os.path.join(data_folder,f'S{sub_id}.mat')
data_mat = scipy.io.loadmat(data_path)
eeg_d = []
label = []
for k_tra in range(20):
tmp_eeg = data_mat['trials'][0, k_tra]['RawData'][0, 0]['EegData'][0, 0]
lab = 0 if str(data_mat['trials'][0, k_tra]['attended_ear'][0, 0][0]) == 'L' else 1
# times = np.arange(tmp_eeg.shape[0]) / 128. # 假设原始采样率为 128Hz
# 创建一个 MNE Raw 对象
info = mne.create_info(64, 128., 'eeg') # 64 通道,128Hz 采样率
raw = mne.io.RawArray(tmp_eeg.T, info) # 注意,data 需要转置,因为 MNE 要求通道在第一维
# 进行带通滤波
raw.filter(l_freq=0.1, h_freq=63.9)
# 进行陷波滤波
raw.notch_filter(50.0)
# 进行重采样
raw.resample(200, n_jobs=5)
# 将处理后的数据转换回 numpy 数组
data_resampled = np.transpose(raw.get_data())
eeg_d.append(data_resampled)
label.append(lab)
# Return the preprocessed data and labels
return eeg_d, label
def load_data(subject_id):
all_data=[]
all_label=[]
for id in subject_id:
# Initialize dictionaries to store data, labels, and fold indices for all subjects
# Iterate over each subject to preprocess and partition their data
sub_id = f'{id + 1}'
# Load and preprocess data for the subject
# Data is expected to be in the form of trail * time * channels, with a sampling frequency of 128Hz
data, label = preprocess_data_ten(data_folder=args.datadir, sub_id=sub_id)
# Partition the data into training and validation sets
data, label, split_index = list_data_split(
data, None, label, time_len, window_sliding,
sampling_rate=sampling_rate
)
# Normalize the data to have zero mean and unit variance
data = [normalize_data(d) for d in data]
all_data.append(np.concatenate(data, axis=0))
all_label.append(np.concatenate(label, axis=0))
all_subjects_data= torch.from_numpy(np.concatenate(all_data, axis=0)).float()
all_subjects_label = torch.from_numpy(np.concatenate(all_label, axis=0)).float()
return all_subjects_data,all_subjects_label
def within_load_data(subject_id):
all_subjects_data,all_subjects_label = load_data(subject_id)
train_percent = 0.8
train_size = int(train_percent * len(all_subjects_data))
# 随机划分训练集和测试集
train_dataset, test_dataset = random_split(TensorDataset(all_subjects_data, all_subjects_label), [train_size, len(all_subjects_data) - train_size])
# 创建Tensor数据集
train_loader = DataLoader(dataset=train_dataset, batch_size=args.batch_size, shuffle=True)
val_loader = DataLoader(dataset=test_dataset, batch_size=args.batch_size, shuffle=False)
return train_loader,val_loader
def without_trial_load_data(subject_id):
all_subjects_data, all_subjects_label = load_data(subject_id)
train_percent = 0.8
train_size = int(train_percent * len(all_subjects_data))
# 划分训练集和测试集
train_data = all_subjects_data[:train_size]
train_label = all_subjects_label[:train_size]
test_data = all_subjects_data[train_size:]
test_label = all_subjects_label[train_size:]
# 创建Tensor数据集
train_dataset = TensorDataset(train_data, train_label)
test_dataset = TensorDataset(test_data, test_label)
# 创建数据加载器
train_loader = DataLoader(dataset=train_dataset, batch_size=args.batch_size, shuffle=True)
val_loader = DataLoader(dataset=test_dataset, batch_size=args.batch_size, shuffle=False)
return train_loader,val_loader
def without_subject_load_data(train_id,test_id):
train_data,train_label = load_data(train_id)
test_data,test_label = load_data(test_id)
# 随机划分训练集和测试集
train_dataset = TensorDataset(train_data,train_label)
test_dataset = TensorDataset(test_data,test_label)
# 创建Tensor数据集
train_loader = DataLoader(dataset=train_dataset, batch_size=args.batch_size, shuffle=True)
val_loader = DataLoader(dataset=test_dataset, batch_size=args.batch_size, shuffle=False)
return train_loader,val_loader
def main(running_file):
# all_data, all_labels = load_data([args.subject_id])
all_kul_subject_id = [i for i in range(16)]
all_kul_subject_id.remove(args.subject_id)
# train_data,train_label = load_data(all_kul_subject_id)
# val_data,val_label = load_data([args.subject_id])
train_loader,val_loader = without_subject_load_data(all_kul_subject_id,[args.subject_id])
criterion = nn.CrossEntropyLoss()
criterion_smooth = CrossEntropyLabelSmooth(2, args.label_smooth)
best_prec1 = 0.0
saveID = None
kf = KFold(n_splits=5, shuffle=True, random_state=520520)
fold_idx = 1
all_prec1_scores = []
best_prec1 = 0.0
if args.model == "cacnn":
model = CACNN(channels_num=64, sample_len=128, is_attention=True)
elif args.model == "eegnet":
model = EEGNet(channels_num=64)
elif args.model == "eegnet_":
model = EEGNet_(channels_num=64)
elif args.model == "eegnet_bnn":
model = EEGNet_bnn(channels_num=64)
elif args.model == "resnet18":
model = ResNet18(channels_num=64,sample_len=128)
elif args.model == "inception":
model = INCEPTION(channels_num=64,sample_len=128)
elif args.model == "pyramidnet":
model = PYRAMIDNET(channels_num=64,sample_len=128)
elif args.model == "gcn":
# Set the model parameters and create the model
graph_layer_num = 3
graph_convolution_kernel = 16
is_channel_attention = False
model = GCN(channels_num, sample_len, graph_layer_num, graph_convolution_kernel, is_channel_attention)
elif args.model == "cnn_lstm":
model = CNN_LSTM(channels_num=64)
if args.model == "XGBoost":
train_data_reshaped = train_data.numpy().reshape(train_data.shape[0], -1)
val_data_reshaped = val_data.numpy().reshape(val_data.shape[0], -1)
train_label_numpy = train_label.numpy()
val_label_numpy = val_label.numpy()
# 创建DMatrix对象
dtrain = xgb.DMatrix(train_data_reshaped, label=train_label_numpy)
dval = xgb.DMatrix(val_data_reshaped, label=val_label_numpy)
# 设置参数:二分类问题
params = {
'objective': 'binary:logistic',
'eval_metric': 'logloss',
'max_depth': 6,
'learning_rate': 0.1,
'n_estimators': 200,
'use_label_encoder': False
}
# 训练模型
model = xgb.train(params, dtrain, num_boost_round=100, evals=[(dval, 'validation')])
elif args.model == "AdaBoost":
# 将 train_data 和 val_data 转换为 numpy 并展平
train_data_reshaped = train_data.numpy().reshape(train_data.shape[0], -1)
val_data_reshaped = val_data.numpy().reshape(val_data.shape[0], -1)
# 将标签也转换为 numpy 格式
train_label_numpy = train_label.numpy()
val_label_numpy = val_label.numpy()
# 初始化一个浅层决策树作为基学习器
estimator = DecisionTreeClassifier(max_depth=1)
# 初始化 AdaBoost 模型
ada_model = AdaBoostClassifier(estimator =estimator , n_estimators=50, learning_rate=0.1)
# 训练模型
ada_model.fit(train_data_reshaped, train_label_numpy)
elif args.model == "Decision_Tree":
train_data_reshaped = train_data.numpy().reshape(train_data.shape[0], -1)
val_data_reshaped = val_data.numpy().reshape(val_data.shape[0], -1)
# 将标签也转换为 numpy 格式
train_label_numpy = train_label.numpy()
val_label_numpy = val_label.numpy()
# 初始化决策树模型
dt_model = DecisionTreeClassifier(max_depth=6) # 你可以调整 max_depth 来控制树的复杂度
# 训练模型
dt_model.fit(train_data_reshaped, train_label_numpy)
elif args.model == "Random_Forest":
train_data_reshaped = train_data.numpy().reshape(train_data.shape[0], -1)
val_data_reshaped = val_data.numpy().reshape(val_data.shape[0], -1)
# 将标签也转换为 numpy 格式
train_label_numpy = train_label.numpy()
val_label_numpy = val_label.numpy()
# 初始化随机森林模型
rf_model = RandomForestClassifier(n_estimators=100, max_depth=6, random_state=42)
# 训练模型
rf_model.fit(train_data_reshaped, train_label_numpy)
elif args.model == "Gaussian_Naive_Bayes":
train_data_reshaped = train_data.numpy().reshape(train_data.shape[0], -1)
val_data_reshaped = val_data.numpy().reshape(val_data.shape[0], -1)
# 将标签也转换为 numpy 格式
train_label_numpy = train_label.numpy()
val_label_numpy = val_label.numpy()
# 初始化 Gaussian Naive Bayes 模型
gnb_model = GaussianNB()
# 训练模型
gnb_model.fit(train_data_reshaped, train_label_numpy)
print(f"Fold {fold_idx}...")
if args.model == "XGBoost":
# 预测并评估
val_preds = model.predict(dval)
val_preds_binary = [1 if pred > 0.5 else 0 for pred in val_preds]
# 计算准确率
val_prec1 = accuracy_score(val_label_numpy, val_preds_binary)
best_prec1 = max(val_prec1, best_prec1)
print(f'验证集准确率: {val_prec1 * 100:.2f}%')
elif args.model == "AdaBoost":
# 在验证集上进行预测
val_preds = ada_model.predict(val_data_reshaped)
# 计算准确率
val_prec1 = accuracy_score(val_label_numpy, val_preds)
best_prec1 = max(val_prec1, best_prec1)
print(f'验证集准确率: {val_prec1 * 100:.2f}%')
elif args.model == "Decision_Tree":
# 在验证集上进行预测
val_preds = dt_model.predict(val_data_reshaped)
# 计算准确率
val_prec1 = accuracy_score(val_label_numpy, val_preds)
best_prec1 = max(val_prec1, best_prec1)
print(f'验证集准确率: {val_prec1 * 100:.2f}%')
elif args.model == "Random_Forest":
# 在验证集上进行预测
val_preds = rf_model.predict(val_data_reshaped)
val_prec1 = accuracy_score(val_label_numpy, val_preds)
best_prec1 = max(val_prec1, best_prec1)
print(f'验证集准确率: {val_prec1 * 100:.2f}%')
elif args.model == "Gaussian_Naive_Bayes":
val_preds = gnb_model.predict(val_data_reshaped)
val_prec1 = accuracy_score(val_label_numpy, val_preds)
best_prec1 = max(val_prec1, best_prec1)
print(f'验证集准确率: {val_prec1 * 100:.2f}%')
else:
model = model.cuda()
if args.opt == 'adam':
optimizer = torch.optim.Adam(model.parameters(),lr=args.lr,weight_decay=args.wd)
elif args.opt == 'sgd':
optimizer = torch.optim.SGD(model.parameters(),lr=args.lr,weight_decay=args.wd, momentum=args.momentum)
for epoch in range(args.epochs):
lr_str = adjust_learning_rate(optimizer, epoch, args, method=args.lr_type)
train_prec1, loss = train(train_loader, model, criterion, optimizer, epoch, running_file,lr_str, args)
val_prec1 = validate(val_loader, model, criterion, args)
is_best = val_prec1 >= best_prec1
best_prec1 = max(val_prec1, best_prec1)
if is_best:
print(f"New best precision at fold {fold_idx}, epoch {epoch}: {best_prec1}")
all_prec1_scores.append(best_prec1)
fold_idx += 1
avg_prec1 = np.mean(all_prec1_scores)
print(f"Average Prec@1 across all folds: {avg_prec1}")
# for epoch in range( args.epochs):
# lr_str = adjust_learning_rate(optimizer, epoch, args, method=args.lr_type)
# tr_prec1, loss = \
# train(train_loader, model, criterion, optimizer, epoch,
# running_file, lr_str, args)
# val_prec1 = validate(val_loader, model, criterion, args)
# is_best = val_prec1 >= best_prec1
# best_prec1 = max(val_prec1, best_prec1)
# log = ("Epoch %03d/%03d: top1 %.4f " + \
# " | train-top1 %.4f | loss %.4f | lr %s | Time %s\n") \
# % (epoch, args.epochs, val_prec1, tr_prec1, \
# loss, lr_str, time.strftime('%Y-%m-%d %H:%M:%S'))
# with open(log_file, 'a') as f:
# f.write(log)
# print('checkpoint saving in local rank 0')
# running_file.write('checkpoint saving in local rank 0\n')
# running_file.flush()
# saveID = save_checkpoint({
# 'epoch': epoch,
# 'state_dict': model.state_dict(),
# 'best_prec1': best_prec1,
# 'optimizer': optimizer.state_dict(),
# }, epoch, args.savedir, is_best,
# saveID, keep_freq=args.save_freq)
with open(f'/home/kul/results/{args.model}.csv','a') as f:
f.write(f"{args.subject_id},{avg_prec1}\n")
def train(train_loader, model, criterion, optimizer, epoch,
running_file, running_lr, args):
batch_time = AverageMeter()
data_time = AverageMeter()
losses = AverageMeter()
top1 = AverageMeter('sum')
top5 = AverageMeter('sum')
## Switch to train mode
model.train()
running_file.write('\n%s\n' % str(args))
running_file.flush()
wD = len(str(len(train_loader)))
wE = len(str(args.epochs))
end = time.time()
# change the parameter of recu and fda
for i, (input, target) in enumerate(train_loader):
## Measure data loading time
data_time.update(time.time() - end)
input = input.cuda()
target = target.cuda().long()
## Compute output
output = model(input)
loss = criterion(output, target)
## Measure accuracy and record loss
prec1 = accuracy(output.data, target)[0]
losses.update(loss.item(), input.size(0))
top1.update(prec1.item(), input.size(0))
## Compute gradient and do SGD step
optimizer.zero_grad()
loss.backward()
optimizer.step()
# clamp real_weights and bconv weights, not other weights (bnn, relu, sign...)
#clip(optimizer, args.clip)
## Measure elapsed time
batch_time.update(time.time() - end)
end = time.time()
## Record
if i % args.print_freq == 0:
runinfo = str((' Epoch: [{0:0%dd}/{1:0%dd}][{2:0%dd}/{3:0%dd}]\t' \
% ( wE, wE, wD, wD) + \
'Time {batch_time.val:.3f}\t' + \
'Data {data_time.val:.3f}\t' + \
'Loss {loss.val:.4f}\t' + \
'Prec@1 {top1.val100:.3f}\t' + \
'lr {lr}\t').format(
epoch, args.epochs, i, len(train_loader),
batch_time=batch_time, data_time=data_time,
loss=losses, top1=top1,lr=running_lr))
print(runinfo)
running_file.write('%s\n' % runinfo)
running_file.flush()
return top1.avg100, losses.avg
def validate(val_loader, model, criterion, args):
batch_time = AverageMeter()
losses = AverageMeter()
top1 = AverageMeter('sum')
top5 = AverageMeter('sum')
import copy
## Switch to evaluate mode
# test_model = copy.deepcopy(model)
model.eval()
# model = test_model
# compare_models(model,test_model)
end = time.time()
for i, (input, target) in enumerate(val_loader):
with torch.no_grad():
target = target.cuda().long()
input = input.cuda()
## Compute output
output = model(input)
loss = criterion(output, target)
## Measure accuracy and record loss
prec1 = accuracy(output.data, target)[0]
losses.update(loss.data.item(), input.size(0))
top1.update(prec1.item(), input.size(0))
## Measure elapsed time
batch_time.update(time.time() - end)
end = time.time()
## Record
if i % args.print_freq == 0:
print('Test: [{0}/{1}]\t'
'Time {batch_time.val:.3f} ({batch_time.avg:.3f})\t'
'Loss {loss.val:.4f} ({loss.avg:.4f})\t'
'Prec@1 {top1.val100:.3f} ({top1.avg100:.3f})'.format(
i, len(val_loader), batch_time=batch_time, loss=losses,
top1=top1))
print(' * Prec@1 {top1.avg100:.3f}'.format(top1=top1))
return top1.avg100
if __name__ == '__main__':
"""
The main entry point of the script that processes the results from the main function,
calculates the accuracy & standard deviation, and saves the results & average results.
"""
args.savedir = f"{args.savedir}/{args.model}/{args.subject_id}_{time.strftime('%Y-%m-%d-%H-%M-%S')}"
os.makedirs(args.savedir, exist_ok=True)
log_file = os.path.join(args.savedir, '%s_log.txt' % args.model)
running_file = os.path.join(args.savedir, '%s_running-%s.txt' % (args.model, time.strftime('%Y-%m-%d-%H-%M-%S')))
with open(running_file, 'w') as f:
main(f)