pass R CMD check sort of

Author: bgoodri

DESCRIPTION

@@ -1,8 +1,8 @@
 Package: rstanarm
 Type: Package
 Title: Bayesian Applied Regression Modeling via Stan
-Version: 2.32.1
-Date: 2024-01-15
+Version: 2.32.2
+Date: 2025-09-29
 Encoding: UTF-8
 Authors@R: c(person("Jonah", "Gabry", email = "jsg2201@columbia.edu", role = "aut"),
              person("Imad", "Ali", role = "ctb"),
@@ -76,4 +76,4 @@ UseLTO: true
 NeedsCompilation: yes
 URL: https://mc-stan.org/rstanarm/, https://discourse.mc-stan.org
 BugReports: https://github.com/stan-dev/rstanarm/issues
-RoxygenNote: 7.3.2
+RoxygenNote: 7.3.3

NAMESPACE

@@ -23,6 +23,7 @@ S3method(fixef,stanmvreg)
 S3method(fixef,stanreg)
 S3method(formula,stanmvreg)
 S3method(formula,stanreg)
+S3method(get_x,betareg)
 S3method(get_x,default)
 S3method(get_x,gamm4)
 S3method(get_x,lmerMod)

R/bayes_R2.R

@@ -13,10 +13,10 @@
 #'   sample size (the posterior distribution of R-squared).
 #'   
 #' @references
-#' Andrew Gelman, Ben Goodrich, Jonah Gabry, and Aki Vehtari (2018). R-squared
+#' Andrew Gelman, Ben Goodrich, Jonah Gabry, and Aki Vehtari (2019). R-squared
 #' for Bayesian regression models. \emph{The American Statistician}, to appear.
 #' \doi{10.1080/00031305.2018.1549100}
-#' (\href{http://www.stat.columbia.edu/~gelman/research/published/bayes_R2_v3.pdf}{Preprint},
+#' (\href{https://www.tandfonline.com/doi/abs/10.1080/00031305.2018.1549100}{Article},
 #' \href{https://avehtari.github.io/bayes_R2/bayes_R2.html}{Notebook})
 #' 
 #' @examples

R/doc-datasets.R

@@ -177,7 +177,7 @@
 #' generalizations. \emph{Journal of the American Statistical Association}
 #' \strong{70}(350), 311--319.
 #' 
-#' @templateVar armRef \url{https://stat.columbia.edu/~gelman/arm/}
+#' @templateVar armRef \url{https://sites.stat.columbia.edu/gelman/arm/}
 #' @template reference-gelman-hill
 #' 
 #' @references

R/doc-rstanarm-package.R

@@ -91,8 +91,8 @@
 #'   question about \pkg{rstanarm} on the Stan-users forum.
 #' }
 #'
-#' @templateVar armRef \url{https://stat.columbia.edu/~gelman/arm/}
-#' @templateVar bdaRef \url{https://stat.columbia.edu/~gelman/book/}
+#' @templateVar armRef \url{https://sites.stat.columbia.edu/gelman/arm/}
+#' @templateVar bdaRef \url{https://sites.stat.columbia.edu/gelman/book/}
 #' @template reference-lme4
 #' @template reference-bda
 #' @template reference-gelman-hill

R/pp_check.R

@@ -312,7 +312,7 @@ is_binomial_ppc <- function(object, ...) {
     if (!is.null(xvar)) {
       dots[["x"]] <- .ppc_xvar(object, xvar, m = m)
     } else {
-      if (funname %in% c("ppc_intervals", "ppc_ribbon")) {
+      if (funname %in% c("ppc_intervals", "ppc_ribbon", "ppc_error_binned")) {
         message("'x' not specified in '...'. Using x=1:length(y).")
         dots[["x"]] <- seq_along(y)
       } else {