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batch_single_subject.sh
aSCOR
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1 parent 8812617 commit cd149daCopy full SHA for cd149da
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single_subject/batch_single_subject.sh
@@ -438,7 +438,7 @@ fsleyes t2.nii.gz -cm greyscale t2_canal_seg_seg.nii.gz -cm red -a 70.0 &
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# Compute aSCOR (Adapted Spinal Cord Occupation Ratio)
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# i.e. Spinal cord to canal ratio using the canal seg
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-sct_compute_ascor -i-SC t2_seg.nii.gz -i-canal t2_canal_seg.nii.gz -perlevel -1 -o ascor.csv
+sct_compute_ascor -i-SC t2_seg.nii.gz -i-canal t2_canal_seg.nii.gz -perlevel 1 -o ascor.csv
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# Segment the spinal nerve rootlets
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sct_deepseg rootlets -i t2.nii.gz -qc ~/qc_singleSubj
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