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# sct_tutorial_data
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This repository contains image files required for the **[Spinal Cord Toolbox tutorials](https://spinalcordtoolbox.com/en/latest/tutorials/tutorials.html)**. It also contains scripts with all of the tutorial commands to demonstrate how commands can be linked together to form a pipeline.
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This dataset contains image files required for the **[Spinal Cord Toolbox tutorials](https://spinalcordtoolbox.com/en/latest/tutorials/tutorials.html)**. It also contains two scripts with all of the tutorial commands, to demonstrate how commands can be linked together to form a pipeline.
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## Using this repo
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## Using this dataset
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There are three ways to use this repo:
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There are three ways to use this dataset:
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1. Download the entire `sct_tutorial_data` dataset ([Releases](https://github.com/spinalcordtoolbox/sct_tutorial_data/releases/latest) -> "[Source code (.zip)](https://github.com/spinalcordtoolbox/sct_tutorial_data/archive/refs/heads/master.zip)"), then follow along with each tutorial in the documentation from start to finish. (The tutorials link together.)
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2. Download the entire dataset, but use the included batch scripts ([`batch_single_subject.sh`](https://github.com/spinalcordtoolbox/sct_tutorial_data/blob/master/single_subject/batch_single_subject.sh) and [`process_data.sh`](https://github.com/spinalcordtoolbox/sct_tutorial_data/blob/master/multi_subject/process_data.sh)) to execute all of the commands together as a pipeline.
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3. Download a single dataset for a specific tutorial ([Releases](https://github.com/spinalcordtoolbox/sct_tutorial_data/releases/latest) -> e.g. "[`data_spinalcord-segmentation.zip`](https://github.com/spinalcordtoolbox/sct_tutorial_data/releases/latest/download/data_spinalcord-segmentation.zip)"), and complete just that tutorial.
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## Making changes to this repo
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## Making changes to this dataset
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If you've written or modified a tutorial for SCT, you'll need to do 4 things:
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If you've written or modified a tutorial for SCT, and your tutorial relies on certain files, updating this dataset requires 4 things:
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1. Update the batch scripts ([`batch_single_subject.sh`](https://github.com/spinalcordtoolbox/sct_tutorial_data/blob/master/single_subject/batch_single_subject.sh) and [`process_data.sh`](https://github.com/spinalcordtoolbox/sct_tutorial_data/blob/master/multi_subject/process_data.sh)) with any new or modified commands.
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2. Update the file [`tutorial-datasets.csv`](https://github.com/spinalcordtoolbox/sct_tutorial_data/blob/master/tutorial-datasets.csv) for your tutorial.
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