File tree Expand file tree Collapse file tree
Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -49,7 +49,7 @@ label_if_does_not_exist() {
4949 local file_seg=" ${2} "
5050 # Update global variable with segmentation file name
5151 FILELABEL=" ${file} " _labels
52- FILELABELMANUAL=" ${PATH_DATA} " /derivatives/labels/" ${SUBJECT} " /anat/" ${FILELABEL} " -manual .nii.gz
52+ FILELABELMANUAL=" ${PATH_DATA} " /derivatives/labels/" ${SUBJECT} " /anat/" ${FILELABEL} " .nii.gz
5353 echo " Looking for manual label: ${FILELABELMANUAL} "
5454 if [[ -e " ${FILELABELMANUAL} " ]]; then
5555 echo " Found! Using manual labels."
@@ -74,7 +74,7 @@ segment_if_does_not_exist() {
7474 local contrast=" ${2} "
7575 # Update global variable with segmentation file name
7676 FILESEG=" ${file} " _seg
77- FILESEGMANUAL=" ${PATH_DATA} " /derivatives/labels/" ${SUBJECT} " /anat/" ${FILESEG} " -manual .nii.gz
77+ FILESEGMANUAL=" ${PATH_DATA} " /derivatives/labels/" ${SUBJECT} " /anat/" ${FILESEG} " .nii.gz
7878 echo
7979 echo " Looking for manual segmentation: ${FILESEGMANUAL} "
8080 if [[ -e " ${FILESEGMANUAL} " ]]; then
You can’t perform that action at this time.
0 commit comments