run_script_and_create_release.yml: Upload QC [WIP]

Author: joshuacwnewton

.github/workflows/run_script_and_create_release.yml

@@ -60,6 +60,12 @@ jobs:
         cd "${{ github.event.repository.name }}/single_subject"
         ./batch_single_subject.sh
 
+    - name: "Upload QC report for easier output verification"
+      uses: actions/upload-artifact@v4
+      with:
+        name: batch_single_subject QC (${{ matrix.os }})
+        path: "~/qc_singleSubj"
+
     - name: "Upload CSV files for easier tutorial updating"
       uses: actions/upload-artifact@v4
       with:

single_subject/batch_single_subject.sh

@@ -47,6 +47,7 @@ fi
 cd data/t2
 # Spinal cord segmentation (using the new 2024 contrast-agnostic method)
 sct_deepseg spinalcord -i t2.nii.gz -qc ~/qc_singleSubj
+exit 0
 # The default output is t2_seg.nii.gz
 # You can also choose your own output filename using the “-o” argument
 sct_deepseg spinalcord -i t2.nii.gz -o test/t2_seg_2.nii.gz