Replace sct_deepseg_sc with sct_deepseg spinalcord

Author: joshuacwnewton

single_subject/batch_single_subject.sh

@@ -393,7 +393,7 @@ sct_smooth_spinalcord -i t1.nii.gz -s t1_seg.nii.gz
 # Tips: use flag "-sigma" to specify smoothing kernel size (in mm)
 
 # Second-pass segmentation using the smoothed anatomical image
-sct_deepseg_sc -i t1_smooth.nii.gz -c t1 -qc ~/qc_singleSubj
+sct_deepseg spinalcord -i t1_smooth.nii.gz -qc ~/qc_singleSubj
 
 # Align the spinal cord in the right-left direction using slice-wise translations.
 sct_flatten_sagittal -i t1.nii.gz -s t1_seg.nii.gz