Included PolarGrid class. right now it assumes no ghost cells

Author: ssagynbayeva

pyro/mesh/patch.py

@@ -34,9 +34,9 @@
 import h5py
 import numpy as np
 
-import pyro.mesh.boundary as bnd
-from pyro.mesh.array_indexer import ArrayIndexer, ArrayIndexerFC
-from pyro.util import msg
+# import pyro.mesh.boundary as bnd
+# from pyro.mesh.array_indexer import ArrayIndexer, ArrayIndexerFC
+# from pyro.util import msg
 
 
 class Grid2d:
@@ -885,5 +885,174 @@ def do_demo():
     mydata.pretty_print("a")
 
 
-if __name__ == "__main__":
-    do_demo()
+# **c checking
+class PolarGrid(Grid2d):
+    """
+    the 2-d grid class.  The grid object will contain the coordinate
+    information (at various centerings).
+
+    A basic (1-d) representation of the layout is::
+
+       |     |      |     X     |     |      |     |     X     |      |     |
+       +--*--+- // -+--*--X--*--+--*--+- // -+--*--+--*--X--*--+- // -+--*--+
+          0          ng-1    ng   ng+1         ... ng+nx-1 ng+nx      2ng+nx-1
+
+                            ilo                      ihi
+
+       |<- ng guardcells->|<---- nx interior zones ----->|<- ng guardcells->|
+
+    The '*' marks the data locations.
+    """
+
+    # pylint: disable=too-many-instance-attributes
+
+    def __init__(self, nx, ny, ng=1,
+                 xmin=0.0, xmax=1.0, ymin=0.0, ymax=1.0):
+
+        """
+        Create a PolarGrid object.
+
+        The only data that we require is the number of points that
+        make up the mesh in each direction.  Optionally we take the
+        extrema of the domain (default is [0,1]x[0,1]) and number of
+        ghost cells (default is 1).
+
+        Note that the Grid2d object only defines the discretization,
+        it does not know about the boundary conditions, as these can
+        vary depending on the variable.
+
+        Parameters
+        ----------
+        nx : int
+            Number of zones in the r-direction
+        ny : int
+            Number of zones in the theta-direction
+        ng : int, optional
+            Number of ghost cells
+        xmin : float, optional
+            Physical coordinate at the lower x boundary
+        xmax : float, optional
+            Physical coordinate at the upper x boundary
+        ymin : float, optional
+            Physical coordinate at the lower y boundary
+        ymax : float, optional
+            Physical coordinate at the upper y boundary
+        """
+
+        # pylint: disable=too-many-arguments
+
+        # size of grid
+        self.nx = int(nx)
+        self.ny = int(ny)
+        self.ng = int(ng)
+
+        self.qx = int(2*ng + nx)
+        self.qy = int(2*ng + ny)
+
+        # domain extrema
+        self.xmin = xmin
+        self.xmax = xmax
+
+        self.ymin = ymin
+        self.ymax = ymax
+
+        # compute the indices of the block interior (excluding guardcells)
+        self.ilo = self.ng
+        self.ihi = self.ng + self.nx-1
+
+        self.jlo = self.ng
+        self.jhi = self.ng + self.ny-1
+
+        # center of the grid (for convenience)
+        self.ic = self.ilo + self.nx//2 - 1
+        self.jc = self.jlo + self.ny//2 - 1
+
+        # define the coordinate information at the left, center, and right
+        # zone coordinates
+        self.dx = (xmax - xmin)/nx
+
+        self.xl = (np.arange(self.qx) - ng)*self.dx + xmin
+        self.xr = (np.arange(self.qx) + 1.0 - ng)*self.dx + xmin
+        self.x = 0.5*(self.xl + self.xr)
+
+        self.dy = (ymax - ymin)/ny
+
+        self.yl = (np.arange(self.qy) - ng)*self.dy + ymin
+        self.yr = (np.arange(self.qy) + 1.0 - ng)*self.dy + ymin
+        self.y = 0.5*(self.yl + self.yr)
+
+        # 2-d versions of the zone coordinates (replace with meshgrid?)
+        x2d = np.repeat(self.x, self.qy)
+        x2d.shape = (self.qx, self.qy)
+        self.x2d = x2d
+
+        y2d = np.repeat(self.y, self.qx)
+        y2d.shape = (self.qy, self.qx)
+        y2d = np.transpose(y2d)
+        self.y2d = y2d
+
+
+    def face_area(self):
+        """
+        Return an array of the face areas. 
+        The shape of the returned array is (ni, nj).
+        """
+        tr = lambda arr: arr.transpose(1, 2, 0)
+        x = self.cell_vertices()[:,0]
+        y = self.cell_vertices()[0,:]
+        r0 = x[:-1, :-1]
+        r1 = x[+1:, :-1]
+        t0 = y[:-1, :-1]
+        t1 = y[+1:, +1:]
+
+        # ** the area of the arc
+
+        area_i = np.pi * (r0 * np.sin(t0) + r0 * np.sin(t1)) * np.sqrt(np.square(r0 * np.sin(t1) - r0 * np.sin(t0)) + np.square(r0 * np.cos(t1) - r0 * np.cos(t0)))
+        area_j = np.pi * (r0 * np.sin(t0) + r1 * np.sin(t0)) * np.sqrt(np.square(r1 * np.sin(t0) - r0 * np.sin(t0)) + np.square(r1 * np.cos(t0) - r0 * np.cos(t0)))
+        return tr(np.array([area_i, area_j]))
+
+    def cell_volumes(self):
+        """
+        Return an array of the cell volume data for the given coordinate box
+        The shape of the returned array is (ni, nj).
+        """
+
+        x = self.cell_vertices()[:,0]
+        y = self.cell_vertices()[0,:]
+
+        r0 = x[:-1, :-1]
+        r1 = x[+1:, :-1]
+        t0 = y[:-1, :-1]
+        t1 = y[+1:, +1:]
+
+        return (r1 ** 3 - r0 ** 3) * (np.cos(t1) - np.cos(t0)) * (-2.0 * np.pi) / 3.0
+        # return r1
+
+    def cell_vertices(self):
+        """
+        Return the coordinates of cell vertices
+        The arrays range from 0 to 1 for now
+        """
+        # if self.ng == 0:
+        #     xv = np.linspace(0, 1, self.nx + 1)[:-1]
+        #     yv = np.linspace(0, 1, self.ny + 1)[:-1]
+        # else:
+        #     xv = np.linspace(0, 1, self.nx + 1)
+        #     yv = np.linspace(0, 1, self.ny + 1)
+
+        xv = np.linspace(0, 1, self.nx + 1)[:-1]
+        yv = np.linspace(0, 1, self.ny + 1)[:-1]
+
+     
+        tr = lambda arr: arr.transpose(1, 2, 0)
+        x, y = np.meshgrid(xv, yv, indexing="ij")
+        return tr(np.array([x, y]))
+
+   
+
+    
+
+
+
+# if __name__ == "__main__":
+#     do_demo()