updates

zingale · zingale · commit 840f19a2c20f · 2018-03-29T13:02:54.000-04:00
diff --git a/docs/source/advection_fv4.rst b/docs/source/advection_fv4.rst
@@ -24,14 +24,6 @@ advection\_fv4\.fluxes module
     :undoc-members:
     :show-inheritance:
 
-advection\_fv4\.setup module
-----------------------------
-
-.. automodule:: advection_fv4.setup
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 advection\_fv4\.simulation module
 ---------------------------------
 
diff --git a/docs/source/compressible.problems.rst b/docs/source/compressible.problems.rst
@@ -49,6 +49,14 @@ compressible\.problems\.kh module
     :undoc-members:
     :show-inheritance:
 
+compressible\.problems\.logo module
+-----------------------------------
+
+.. automodule:: compressible.problems.logo
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 compressible\.problems\.quad module
 -----------------------------------
 
@@ -65,6 +73,14 @@ compressible\.problems\.rt module
     :undoc-members:
     :show-inheritance:
 
+compressible\.problems\.rt2 module
+----------------------------------
+
+.. automodule:: compressible.problems.rt2
+    :members:
+    :undoc-members:
+    :show-inheritance:
+
 compressible\.problems\.sedov module
 ------------------------------------
 
diff --git a/docs/source/compressible.rst b/docs/source/compressible.rst
@@ -40,14 +40,6 @@ compressible\.eos module
     :undoc-members:
     :show-inheritance:
 
-compressible\.setup module
---------------------------
-
-.. automodule:: compressible.setup
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 compressible\.simulation module
 -------------------------------
 
diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -39,6 +39,8 @@
     'sphinx.ext.autosummary',
     'nbsphinx',
     'numpydoc',
+    'sphinx.ext.inheritance_diagram',
+    'sphinx.ext.graphviz',
     'sphinx.ext.githubpages']
 
 # Add any paths that contain templates here, relative to this directory.
diff --git a/docs/source/incompressible.rst b/docs/source/incompressible.rst
@@ -16,14 +16,6 @@ Subpackages
 Submodules
 ----------
 
-incompressible\.setup module
-----------------------------
-
-.. automodule:: incompressible.setup
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 incompressible\.simulation module
 ---------------------------------
 
diff --git a/docs/source/lm_atm.rst b/docs/source/lm_atm.rst
@@ -16,14 +16,6 @@ Subpackages
 Submodules
 ----------
 
-lm\_atm\.setup module
----------------------
-
-.. automodule:: lm_atm.setup
-    :members:
-    :undoc-members:
-    :show-inheritance:
-
 lm\_atm\.simulation module
 --------------------------
 
diff --git a/docs/source/modules.rst b/docs/source/modules.rst
@@ -14,14 +14,20 @@ pyro2
    compressible_react
    compressible_rk
    compressible_sdc
+   convergence
    diffusion
    examples
    incompressible
    lm_atm
    mesh
    multigrid
    plot
+   plotvar
    pyro
+   sedov_compare
+   setup
    simulation_null
+   smooth_error
+   sod_compare
    test
    util
