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    • Robust Spinal Cord MS Lesion Segmentation Across Diverse MRI Protocols and Centers
      Python
      MIT License
      07354Updated Apr 24, 2026Apr 24, 2026
    • Automated extraction of spinal morphometrics and generation of structured radiological reports from MRI data.
      Python
      GNU Lesser General Public License v3.0
      0400Updated Apr 20, 2026Apr 20, 2026
    • Deep-learning based segmentation of the spinal nerve rootlets
      Python
      28232Updated Apr 17, 2026Apr 17, 2026
    • RSNA 2024 Lumbar Spine Degenerative Classification Challenge
      Python
      MIT License
      02112Updated Apr 9, 2026Apr 9, 2026
    • Python
      MIT License
      03161Updated Apr 8, 2026Apr 8, 2026
    • This repo is containing all the code related to the spine foundation model.
      Python
      0250Updated Apr 8, 2026Apr 8, 2026
    • Model to segment WM, GM and MS lesions on 0.075mm isotropic GRE magnitude + phase ex vivo human samples from NIH.
      Python
      MIT License
      21170Updated Mar 15, 2026Mar 15, 2026
    • Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI
      Python
      MIT License
      21861Updated Feb 24, 2026Feb 24, 2026
    • moco-dl

      Public
      Python
      1010Updated Dec 4, 2025Dec 4, 2025
    • utilities

      Public
      Repository containing utility scripts for handling various aspects in a DL model training pipeline
      Python
      MIT License
      09124Updated Nov 3, 2025Nov 3, 2025
    • Deep learning models for the MS-Multi-Spine challenge 2024
      Python
      0220Updated Jul 21, 2025Jul 21, 2025
    • Model repository for lumbar segmentation from EPFL data
      Shell
      MIT License
      0130Updated Jul 10, 2025Jul 10, 2025
    • White and grey matter segmentation on T1-weighted exvivo mouse spinal cord
      Python
      MIT License
      12152Updated Jun 23, 2025Jun 23, 2025
    • ivadomed

      Public
      Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
      Python
      MIT License
      14716225843Updated May 15, 2025May 15, 2025
    • Python
      MIT License
      0090Updated Apr 29, 2025Apr 29, 2025
    • Model repository for SC MS lesion segmentation on MP2RAGE-UNI data from University of Basel, National Institutes of Health (NIH) and Aix-Marseille University.
      Jupyter Notebook
      MIT License
      02240Updated Apr 29, 2025Apr 29, 2025
    • A deep learning model that allows robust SC/GM multi-class segmentation based on ultra-high resolution 7T T2*-w MR images
      0310Updated Apr 29, 2025Apr 29, 2025
    • Deep-learning based segmentation of the spinal cord lesion project
      Python
      MIT License
      2111Updated Apr 4, 2025Apr 4, 2025
    • Jupyter Notebook
      1130Updated Feb 17, 2025Feb 17, 2025
    • A fork of the Project-MONAI/MetricsReloaded repo
      Python
      Apache License 2.0
      13552Updated Jan 28, 2025Jan 28, 2025
    • Python
      0030Updated Dec 5, 2024Dec 5, 2024
    • canproco

      Public
      Code for preprocessing the CanProCo brain and spinal cord dataset
      Jupyter Notebook
      MIT License
      15352Updated Nov 28, 2024Nov 28, 2024
    • 0130Updated Jul 9, 2024Jul 9, 2024
    • Grey and white matters segmentation on exvivo T2 human data.
      0060Updated Apr 24, 2024Apr 24, 2024
    • Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)
      Shell
      MIT License
      0384Updated Apr 12, 2024Apr 12, 2024
    • Light-weighted data for testing/tutorial
      1141Updated Jan 30, 2024Jan 30, 2024
    • t2star_sc

      Public
      0000Updated Oct 4, 2023Oct 4, 2023
    • Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic registration model may late…
      Python
      31313Updated Sep 5, 2023Sep 5, 2023
    • anima-bin

      Public
      pip version of https://anima.readthedocs.io
      Python
      Other
      1000Updated Jul 11, 2023Jul 11, 2023
    • Axon and myelin segmentation of SEM images
      Jupyter Notebook
      0120Updated Apr 1, 2023Apr 1, 2023
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