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    55 repositories

    • seg-sc-ms-lesion-multicontrast

      Public
      Robust Spinal Cord MS Lesion Segmentation Across Diverse MRI Protocols and Centers
      Python
      •
      MIT License
      •0•7•35•4•Updated Apr 24, 2026Apr 24, 2026

    • SpineReports

      Public
      Automated extraction of spinal morphometrics and generation of structured radiological reports from MRI data.
      Python
      •
      GNU Lesser General Public License v3.0
      •0•4•0•0•Updated Apr 20, 2026Apr 20, 2026

    • model-spinal-rootlets

      Public
      Deep-learning based segmentation of the spinal nerve rootlets
      Python
      •2•8•23•2•Updated Apr 17, 2026Apr 17, 2026

    • lumbar-classification-rsna-challenge-2024

      Public
      RSNA 2024 Lumbar Spine Degenerative Classification Challenge
      Python
      •
      MIT License
      •0•2•11•2•Updated Apr 9, 2026Apr 9, 2026

    • model-canal-seg

      Public
      Python
      •
      MIT License
      •0•3•16•1•Updated Apr 8, 2026Apr 8, 2026

    • SpineFoundation

      Public
      This repo is containing all the code related to the spine foundation model.
      Python
      •0•2•5•0•Updated Apr 8, 2026Apr 8, 2026

    • model_seg_sc-gm-lesion_human_ms_exvivo_t2star

      Public
      Model to segment WM, GM and MS lesions on 0.075mm isotropic GRE magnitude + phase ex vivo human samples from NIH.
      Python
      •
      MIT License
      •2•1•17•0•Updated Mar 15, 2026Mar 15, 2026

    • model_seg_sci

      Public
      Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI
      Python
      •
      MIT License
      •2•18•6•1•Updated Feb 24, 2026Feb 24, 2026

    • moco-dl

      Public
      Python
      •1•0•1•0•Updated Dec 4, 2025Dec 4, 2025

    • utilities

      Public
      Repository containing utility scripts for handling various aspects in a DL model training pipeline
      nn-unet
      nn-unet
      Python
      •
      MIT License
      •0•9•12•4•Updated Nov 3, 2025Nov 3, 2025

    • ms-multi-spine-challenge-2024

      Public
      Deep learning models for the MS-Multi-Spine challenge 2024
      Python
      •0•2•2•0•Updated Jul 21, 2025Jul 21, 2025

    • lumbar_seg_EPFL

      Public
      Model repository for lumbar segmentation from EPFL data
      Shell
      •
      MIT License
      •0•1•3•0•Updated Jul 10, 2025Jul 10, 2025

    • model_seg_mouse-sc_wm-gm_t1

      Public
      White and grey matter segmentation on T1-weighted exvivo mouse spinal cord
      mrisegmentationgray-matter
      mrisegmentationgray-matterwhite-matterspinal-cord
      Python
      •
      MIT License
      •1•2•15•2•Updated Jun 23, 2025Jun 23, 2025

    • ivadomed

      Public
      Repository on the collaborative IVADO medical imaging project between the Mila and NeuroPoly labs.
      Python
      •
      MIT License
      •147•162•258•43•Updated May 15, 2025May 15, 2025

    • model-gm-contrast-region-agnostic

      Public
      Python
      •
      MIT License
      •0•0•9•0•Updated Apr 29, 2025Apr 29, 2025

    • model-seg-ms-mp2rage

      Public
      Model repository for SC MS lesion segmentation on MP2RAGE-UNI data from University of Basel, National Institutes of Health (NIH) and Aix-Marseille University.
      model-ivadomed
      model-ivadomed
      Jupyter Notebook
      •
      MIT License
      •0•2•24•0•Updated Apr 29, 2025Apr 29, 2025

    • model-seg-gm-wm-t2star-7t-unet2d-multiclass

      Public
      A deep learning model that allows robust SC/GM multi-class segmentation based on ultra-high resolution 7T T2*-w MR images
      deep-learningmedical-imagingsegmentation
      deep-learningmedical-imagingsegmentationconvolutional-neural-networksspinal-cordgray-matter-segmentationwhite-matter-segmentation7t
      0•3•1•0•Updated Apr 29, 2025Apr 29, 2025

    • model-seg-ms-axial-t2w

      Public
      Deep-learning based segmentation of the spinal cord lesion project
      Python
      •
      MIT License
      •2•1•1•1•Updated Apr 4, 2025Apr 4, 2025

    • counterfactual-synthesis-lesion

      Public
      Jupyter Notebook
      •1•1•3•0•Updated Feb 17, 2025Feb 17, 2025

    • MetricsReloaded

      Public
      A fork of the Project-MONAI/MetricsReloaded repo
      Python
      •
      Apache License 2.0
      •13•5•5•2•Updated Jan 28, 2025Jan 28, 2025

    • lumbar-T2star-GMseg

      Public
      Python
      •0•0•3•0•Updated Dec 5, 2024Dec 5, 2024

    • canproco

      Public
      Code for preprocessing the CanProCo brain and spinal cord dataset
      Jupyter Notebook
      •
      MIT License
      •1•5•35•2•Updated Nov 28, 2024Nov 28, 2024

    • Bidsification

      Public
      0•1•3•0•Updated Jul 9, 2024Jul 9, 2024

    • model_seg_exvivo_gm-wm_t2_unet2d-multichannel-softseg

      Public
      Grey and white matters segmentation on exvivo T2 human data.
      0•0•6•0•Updated Apr 24, 2024Apr 24, 2024

    • model-seg-dcm

      Public
      Segmentation of lesions on MRI scans in patients with Degenerative Cervical Myelopathy (DCM)
      Shell
      •
      MIT License
      •0•3•8•4•Updated Apr 12, 2024Apr 12, 2024

    • data-testing

      Public
      Light-weighted data for testing/tutorial
      1•1•4•1•Updated Jan 30, 2024Jan 30, 2024

    • t2star_sc

      Public
      0•0•0•0•Updated Oct 4, 2023Oct 4, 2023

    • multimodal-registration

      Public
      Repository for training and using a contrast agnostic registration model based on the work done in SynthMorph. The contrast agnostic registration model may late…
      Python
      •3•13•1•3•Updated Sep 5, 2023Sep 5, 2023

    • anima-bin

      Public
      pip version of https://anima.readthedocs.io
      Python
      •
      Other
      •1•0•0•0•Updated Jul 11, 2023Jul 11, 2023

    • microscopy-segmentation-monai

      Public
      Axon and myelin segmentation of SEM images
      axonmyelinhistology
      axonmyelinhistologysegmentation-modelsmodel-monai
      Jupyter Notebook
      •0•1•2•0•Updated Apr 1, 2023Apr 1, 2023
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