Repositories list

• skills

  Public
  Public repository for immune repertoire analysis Agent Skills.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2026Feb 10, 2026

• immundata

  Public
  🦋 immundata [R package] – A Unified Data Layer for Large-Scale Single-Cell, Spatial and Bulk Immunomics

  bioinformaticsdata-engineeringimmunotherapy+ 4

  bioinformaticsdata-engineeringimmunotherapyvaccineimmune-repertoireairrimmunomics

  R

  •00 forks•22 stars•00 issues•00 pull requests•Updated Dec 16, 2025Dec 16, 2025

• immunarch

  Public
  🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design

  data-sciencebioinformaticsimmunotherapy+ 4

  data-sciencebioinformaticsimmunotherapyvaccineimmune-repertoireairrimmunomics

  R

  •

  Apache License 2.0

  •7070 forks•338338 stars•1111 issues•11 pull request•Updated Nov 18, 2025Nov 18, 2025

• docs

  Public
  🐦‍🔥 Documentation for ImmunoMind tools

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 31, 2025Oct 31, 2025

• .github

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Oct 30, 2025Oct 30, 2025

• immunomind.github.io

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 11, 2025Oct 11, 2025

• airr-gpt

  Public
  🤖 AIRR-GPT is your intelligent guide for working with bulk and single-cell Adaptive Immune Receptor Repertoire (AIRR) data using immunarch and immundata R packa…

  data-sciencebioinformaticsdata-engineering+ 5

  data-sciencebioinformaticsdata-engineeringimmunotherapyvaccineimmune-repertoireairrimmunomics

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Apr 23, 2025Apr 23, 2025

• rpy2

  Public
  Interface to use R from Python

  Python

  •

  GNU General Public License v2.0

  •8383 forks•00 stars•00 issues•00 pull requests•Updated Jan 20, 2023Jan 20, 2023

• external-packages

  Public
  Dedicated place for pre-build packages

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 6, 2022Dec 6, 2022

• zipfly

  Public
  Writing large ZIP archives without memory inflation

  Python

  •

  MIT License

  •2626 forks•00 stars•00 issues•00 pull requests•Updated Oct 20, 2022Oct 20, 2022

• bi2021spring

  Public
  A project for students from Bioinformatics Institute Spring 2021 class.

  00 forks•22 stars•00 issues•11 pull request•Updated May 29, 2021May 29, 2021

• assessment_R_dev_fall2020

  Public
  The coding task for R software developer.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 15, 2020Oct 15, 2020

• python_interns_fall2020

  Public
  The coding task for python software developer interns

  Python

  •11 fork•00 stars•00 issues•00 pull requests•Updated Aug 10, 2020Aug 10, 2020

• docpages_alpha

  Public
  Cloned Immunarch for docs and website testing purposes.

  R

  •

  GNU Affero General Public License v3.0

  •11 fork•11 star•00 issues•00 pull requests•Updated Jul 8, 2020Jul 8, 2020

• covid19

  Public
  🦠 Regularly updated list of publicly available datasets with single-cell (scRNAseq) and T-cell/antibody immune repertoire (AIRR / RepSeq / immunosequencing) dat…

  bioinformaticsimmunotherapyvaccine+ 6

  bioinformaticsimmunotherapyvaccineimmune-repertoirebcr-repertoirecovid19covid19-dataairrimmunomics

  MIT License

  •44 forks•4646 stars•11 issue•00 pull requests•Updated May 21, 2020May 21, 2020

• immunarch-shiny

  Public
  R

  •22 forks•22 stars•00 issues•00 pull requests•Updated Mar 22, 2020Mar 22, 2020

• slides

  Public
  Slides for presentations by ImmunoMind team

  machine-learningbioinformaticsdeep-learning+ 3

  machine-learningbioinformaticsdeep-learningimmunotherapyvaccineimmunomics

  00 forks•44 stars•00 issues•00 pull requests•Updated May 15, 2019May 15, 2019

• 2019-airr-genova-tutorial-pytorch

  Public
  Incredible Deep Learning in immunooncology with Pytorch - workshop at AIRR Community Meeting IV

  Jupyter Notebook

  •00 forks•99 stars•00 issues•00 pull requests•Updated May 13, 2019May 13, 2019