Repositories list

• ApsimX

  Public
  ApsimX is the next generation of APSIM

  C#

  •

  Other

  •200200 forks•00 stars•00 issues•00 pull requests•Updated Mar 17, 2026Mar 17, 2026

• MCHap

  Public
  Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

  numpyarrayhaplotypes+ 7

  numpyarrayhaplotypesbayesian-inferencedna-sequencesgenotypingpolyploidyhaplotype-assemblyhaplotype-blockspolyploid-genotyping

  Python

  •

  MIT License

  •33 forks•2020 stars•2424 issues•00 pull requests•Updated Nov 17, 2025Nov 17, 2025

• machine-vision-acquisition

  Public archive
  A playpen for generic machine vision acquisition workflows

  Python

  •

  MIT License

  •11 fork•77 stars•00 issues•00 pull requests•Updated Sep 8, 2025Sep 8, 2025

• aspire-lite

  Public
  Aspire Asparagus Android app written by Alastair Hughes

  Java

  •

  Other

  •22 forks•00 stars•00 issues•00 pull requests•Updated Aug 19, 2025Aug 19, 2025

• hidecan

  Public
  Package to create hidecan plots for GWAS and differential expression results

  R

  •

  Other

  •11 fork•77 stars•00 issues•00 pull requests•Updated Jul 17, 2025Jul 17, 2025

• StonySoilLysimeters

  Public
  Analysis and indexes for the stony soil lysimeters

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Nov 13, 2024Nov 13, 2024

• SVS

  Public
  SVS tool development

  Python

  •44 forks•00 stars•00 issues•33 pull requests•Updated Jan 30, 2024Jan 30, 2024

• LoggerPrograms

  Public
  This repository contains programs written for controlling data loggers

  Visual Basic .NET

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 21, 2023Dec 21, 2023

• 20-by-2020

  Public
  Data analysis for a collaborative project with FAR aiming to improve wheat yields

  Jupyter Notebook

  •33 forks•00 stars•00 issues•00 pull requests•Updated Nov 29, 2023Nov 29, 2023

• KateLindyMaryamTestRepo

  Public
  R

  •55 forks•00 stars•00 issues•22 pull requests•Updated Mar 2, 2023Mar 2, 2023

• Xcm_detection_using_Minion_Sequencing

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Feb 24, 2023Feb 24, 2023

• Tuber_bruising

  Public
  Scripts for analysis of genetic components of tuber bruising

  Jupyter Notebook

  •11 fork•00 stars•00 issues•00 pull requests•Updated Dec 14, 2022Dec 14, 2022

• sandpit

  Public
  A demonstration repository

  Jupyter Notebook

  •3030 forks•11 star•00 issues•88 pull requests•Updated Dec 14, 2022Dec 14, 2022

• github-automation

  Public
  Scripts and tools to automate github

  JavaScript

  •00 forks•00 stars•00 issues•11 pull request•Updated Jun 25, 2022Jun 25, 2022

• pyeagleio

  Public
  Python library to interact with https://eagle.io/

  Python

  •00 forks•22 stars•00 issues•00 pull requests•Updated Jun 22, 2022Jun 22, 2022

• pytomicropy

  Public
  Python to Micropython converter

  Python

  •00 forks•1212 stars•00 issues•00 pull requests•Updated Feb 7, 2022Feb 7, 2022

• pyserialdrivers

  Public
  A collection of OOB serial drivers for interacting with predominantly environmental sensors

  Python

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 16, 2021Sep 16, 2021

• ONT_CRISPR-Cas9_enrichment

  Public
  Public Repository for publication workflows

  Jupyter Notebook

  •22 forks•33 stars•00 issues•00 pull requests•Updated Sep 5, 2021Sep 5, 2021

• Example-Tetraploid-Potato-VCF-PRJNA414303

  Public
  Example tetraploid VCF from NCBI BioProject PRJNA414303

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 29, 2021May 29, 2021

• TEFingerprint

  Public
  A Python3 library for transposon fingerprinting

  bioinformaticsclusteringtransposons+ 2

  bioinformaticsclusteringtransposonsdensity-based-clusteringrepeated-elements

  Python

  •

  MIT License

  •22 forks•00 stars•1010 issues•00 pull requests•Updated May 26, 2021May 26, 2021

• nextflow-demo

  Public
  Various examples of using NextFlow in the PFR Environment

  Shell

  •

  GNU General Public License v3.0

  •124124 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2021May 21, 2021

• assemblathon2-analysis

  Public
  collection of scripts and commands used by Ian Korf, Keith Bradnam, and Joe Fass in the analysis of Assemblathon 2 entries (assemblies)

  Perl

  •2121 forks•00 stars•00 issues•00 pull requests•Updated Mar 29, 2021Mar 29, 2021

• eFP-Browser

  Public
  Python

  •

  GNU General Public License v2.0

  •00 forks•11 star•00 issues•00 pull requests•Updated Jan 2, 2021Jan 2, 2021

• AppSecret

  Public
  R6 Package to Work with PKI and AES-256-CBC

  shared-secretsaes-encryption

  shared-secretsaes-encryption

  R

  •

  Other

  •00 forks•00 stars•33 issues•11 pull request•Updated Dec 7, 2020Dec 7, 2020

• docker-ckan

  Public
  Docker Compose setup for CKAN

  Dockerfile

  •8787 forks•00 stars•00 issues•00 pull requests•Updated Jun 4, 2020Jun 4, 2020

• PFR_Spinnaker_Ros_Node

  Public
  Point Grey (FLIR) Spinnaker based camera driver (Blackfly S etc.)

  C++

  •

  MIT License

  •9292 forks•00 stars•00 issues•00 pull requests•Updated May 27, 2020May 27, 2020

• QuickTestMassBalanceCalculator

  Public
  Quick test mass balance calculator. This is a shiny implementation of QTMB as developed in N messure it mange it SFF project.

  R

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 15, 2020Apr 15, 2020

• APSIM_Docker

  Public archive
  Dockerfile and helper files to build Apsim Classic in a Docker container

  Dockerfile

  •

  MIT License

  •11 fork•11 star•00 issues•00 pull requests•Updated Apr 14, 2020Apr 14, 2020

• ckanext-pfr

  Public
  Configuration and settings associated with PFR's CKAN instance

  ckanckanext

  ckanckanext

  Python

  •

  GNU Affero General Public License v3.0

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 13, 2020Apr 13, 2020

• APSIM.Shared

  Public
  C#

  •3838 forks•00 stars•00 issues•00 pull requests•Updated Mar 8, 2020Mar 8, 2020