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    111 repositories

    • wdl-dockerfiles

      Public
      Python
      •
      BSD 3-Clause Clear License
      •2•3•0•5•Updated Apr 23, 2026Apr 23, 2026

    • kivvi

      Public
      KIV2/D4Z4 genotyper using HiFi WGS data
      Rust
      •
      Other
      •0•10•4•0•Updated Apr 23, 2026Apr 23, 2026

    • HiFi-human-WGS-WDL

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •52•78•11•2•Updated Apr 22, 2026Apr 22, 2026

    • jasmine

      Public
      Call select base modifications in PacBio HiFi reads
      BSD 3-Clause Clear License
      •1•17•0•0•Updated Apr 19, 2026Apr 19, 2026

    • mitorsaw

      Public
      Other
      •0•7•0•0•Updated Apr 17, 2026Apr 17, 2026

    • trgt-instability

      Public
      A tool to quantify tandem repeat instability
      Other
      •0•2•2•0•Updated Apr 8, 2026Apr 8, 2026

    • wdl-common

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •16•5•0•1•Updated Apr 7, 2026Apr 7, 2026

    • aardvark

      Public
      A tool for sniffing out the differences in vari-Ants
      benchmarkingvariant-callssequencing-data
      benchmarkingvariant-callssequencing-datavariant-comparison
      Rust
      •
      MIT License
      •0•41•0•0•Updated Apr 7, 2026Apr 7, 2026

    • pb-metagenomics-tools

      Public
      Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
      HTML
      •
      BSD 3-Clause Clear License
      •35•201•0•0•Updated Apr 3, 2026Apr 3, 2026

    • Paraviewer

      Public
      Python
      •
      Other
      •1•8•0•1•Updated Mar 28, 2026Mar 28, 2026

    • Orographer

      Public
      Python
      •
      Other
      •0•0•0•0•Updated Mar 26, 2026Mar 26, 2026

    • pb-StarPhase

      Public
      A phase-aware pharmacogenomic diplotyper for PacBio datasets
      pacbiopharmacogenomicshifi
      pacbiopharmacogenomicshifi
      Rust
      •
      Other
      •5•20•0•0•Updated Mar 24, 2026Mar 24, 2026

    • pbsamoa

      Public
      A C++23 library for reading and writing SAM/BAM/CRAM files.
      C++
      •
      BSD 3-Clause Clear License
      •0•1•0•0•Updated Mar 9, 2026Mar 9, 2026

    • pbcore

      Public
      A Python library for reading and writing PacBio® data files
      Python
      •
      Other
      •27•41•4•3•Updated Mar 6, 2026Mar 6, 2026

    • HiFi-somatic-WDL

      Public
      Tumor-normal variant calling workflow using HiFi reads
      WDL
      •
      BSD 3-Clause Clear License
      •11•29•3•1•Updated Mar 4, 2026Mar 4, 2026

    • pbmm2

      Public
      A minimap2 frontend for PacBio native data formats
      Raku
      •
      BSD 3-Clause Clear License
      •34•215•2•0•Updated Mar 4, 2026Mar 4, 2026

    • paraphase

      Public
      HiFi-based caller for highly similar paralogous genes
      Python
      •
      Other
      •15•67•9•0•Updated Mar 3, 2026Mar 3, 2026

    • ptcp

      Public
      PureTarget Carrier Pipeline (PTCP)
      Python
      •
      BSD 3-Clause Clear License
      •0•8•0•0•Updated Feb 25, 2026Feb 25, 2026

    • isocall

      Public
      A method to joint-call RNA isoforms across many IsoSeq samples
      0•10•0•0•Updated Feb 24, 2026Feb 24, 2026

    • pbtestutils

      Public
      Python
      •0•0•0•0•Updated Feb 21, 2026Feb 21, 2026

    • svx

      Public
      Structural variation aggregation
      Rust
      •
      Other
      •0•8•0•0•Updated Feb 18, 2026Feb 18, 2026

    • owl

      Public
      Rust
      •
      Other
      •1•19•0•0•Updated Jan 29, 2026Jan 29, 2026

    • HiPhase

      Public
      Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
      variantsphasingpacbio-data
      variantsphasingpacbio-datahifistructural-variantsshort-tandem-repeats
      Rust
      •
      Other
      •4•83•0•0•Updated Jan 20, 2026Jan 20, 2026

    • ptcp-qc

      Public
      ptcp-qc generates comprehensive quality control metrics for PacBio sequencing data produced by the PureTarget protocol
      Rust
      •
      Other
      •0•0•0•0•Updated Jan 20, 2026Jan 20, 2026

    • .github

      Public
      0•1•0•0•Updated Jan 6, 2026Jan 6, 2026

    • trgt-lps

      Public
      0•4•1•0•Updated Jan 4, 2026Jan 4, 2026

    • portello

      Public
      Transfer HiFi read mappings from their own assembly contigs to a standard reference
      Rust
      •
      Other
      •4•39•1•0•Updated Dec 30, 2025Dec 30, 2025

    • pbAA

      Public
      8•27•1•0•Updated Dec 22, 2025Dec 22, 2025

    • trgt

      Public
      Tandem repeat genotyping and visualization from PacBio HiFi data
      Rust
      •
      Other
      •15•136•49•0•Updated Dec 8, 2025Dec 8, 2025

    • trgt-denovo

      Public
      De novo tandem repeat calling from PacBio HiFi data
      Jupyter Notebook
      •
      Other
      •3•19•1•0•Updated Dec 5, 2025Dec 5, 2025
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