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    • Data for mykrobe command line tool
      MIT License
      2000Updated Mar 27, 2026Mar 27, 2026
    • mykrobe

      Public
      Antibiotic resistance prediction in minutes
      Python
      MIT License
      30115152Updated Mar 27, 2026Mar 27, 2026
    • Server API for Atlas
      JavaScript
      0100Updated Dec 8, 2024Dec 8, 2024
    • mccortex

      Public
      Cortex on steroids: for larger populations with better assembly
      C
      MIT License
      24000Updated Sep 27, 2023Sep 27, 2023
    • Sample tracking service for Mykrobe Atlas project
      Python
      0001Updated Feb 15, 2023Feb 15, 2023
    • Python
      0031Updated Feb 15, 2023Feb 15, 2023
    • JavaScript
      0001Updated Nov 28, 2022Nov 28, 2022
    • Test species and lineage calls made by mykrobe
      Python
      MIT License
      1000Updated Sep 6, 2022Sep 6, 2022
    • Shell
      0001Updated Jan 1, 2022Jan 1, 2022
    • Automated pipeline built on top of clockwork and the kmersearch-api for download and processing of tb samples from the ENA
      Python
      0000Updated Dec 19, 2021Dec 19, 2021
    • Python
      0000Updated Dec 17, 2021Dec 17, 2021
    • Pipelines and scripts for calculating genetic distance between samples
      Python
      0100Updated Dec 17, 2021Dec 17, 2021
    • The analysis API and task manager for Mykrobe atlas
      Python
      0000Updated Dec 16, 2021Dec 16, 2021
    • 0100Updated Sep 23, 2021Sep 23, 2021
    • Nextflow
      0000Updated Aug 20, 2021Aug 20, 2021
    • REST API client library for accessing Mykrobe Atlas Kmersearch API
      Python
      0000Updated Jul 9, 2021Jul 9, 2021
    • JSON Schemas associated with Mykrobe Atlas
      JavaScript
      MIT License
      0100Updated Jun 4, 2021Jun 4, 2021
    • Documentation and scripts for uploading preprocessed analysis data to Kubernetes hosted applications.
      Python
      0000Updated May 21, 2021May 21, 2021
    • Java
      0000Updated Apr 23, 2021Apr 23, 2021
    • Python
      0000Updated Feb 23, 2021Feb 23, 2021
    • A Mongo db which hosts tb background variants to support Mykrobe make probes functionality for Atlas
      Dockerfile
      0000Updated Feb 10, 2021Feb 10, 2021
    • Python
      0000Updated Nov 20, 2020Nov 20, 2020
    • REST API client library for accessing Mykrobe Atlas distance API
      Python
      0000Updated Nov 6, 2020Nov 6, 2020
    • Shell
      0001Updated Jun 25, 2020Jun 25, 2020
    • Keycloak configuration for Atlas
      JavaScript
      0000Updated Apr 30, 2020Apr 30, 2020
    • 0000Updated Apr 30, 2020Apr 30, 2020
    • clockwork

      Public
      CRyPTIC data processing pipelines
      HTML
      MIT License
      22100Updated Jan 15, 2020Jan 15, 2020
    • Insight pipeline for Mykrobe Atlas
      Shell
      0000Updated Aug 20, 2018Aug 20, 2018
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