Repositories list

• mykrobe-data

  Public
  Data for mykrobe command line tool

  MIT License

  •22 forks•00 stars•00 issues•00 pull requests•Updated Mar 27, 2026Mar 27, 2026

• mykrobe

  Public
  Antibiotic resistance prediction in minutes

  Python

  •

  MIT License

  •3030 forks•115115 stars•1515 issues•22 pull requests•Updated Mar 27, 2026Mar 27, 2026

• mykrobe-atlas-api

  Public
  Server API for Atlas

  JavaScript

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 8, 2024Dec 8, 2024

• mccortex

  Public
  Cortex on steroids: for larger populations with better assembly

  C

  •

  MIT License

  •2424 forks•00 stars•00 issues•00 pull requests•Updated Sep 27, 2023Sep 27, 2023

• mykrobe-atlas-tracking-api

  Public
  Sample tracking service for Mykrobe Atlas project

  Python

  •00 forks•00 stars•00 issues•11 pull request•Updated Feb 15, 2023Feb 15, 2023

• mykrobe-atlas-distance-api

  Public
  Python

  •00 forks•00 stars•33 issues•11 pull request•Updated Feb 15, 2023Feb 15, 2023

• mykrobe-website

  Public
  JavaScript

  •00 forks•00 stars•00 issues•11 pull request•Updated Nov 28, 2022Nov 28, 2022

• mykrobe-lineage-test

  Public
  Test species and lineage calls made by mykrobe

  Python

  •

  MIT License

  •11 fork•00 stars•00 issues•00 pull requests•Updated Sep 6, 2022Sep 6, 2022

• mykrobe-atlas-k8

  Public
  Shell

  •00 forks•00 stars•00 issues•11 pull request•Updated Jan 1, 2022Jan 1, 2022

• atlas_ena_curation

  Public
  Automated pipeline built on top of clockwork and the kmersearch-api for download and processing of tb samples from the ENA

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 19, 2021Dec 19, 2021

• mykrobe-atlas-kmersearch-api

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 17, 2021Dec 17, 2021

• mykrobe-atlas-distance-data

  Public
  Pipelines and scripts for calculating genetic distance between samples

  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Dec 17, 2021Dec 17, 2021

• mykrobe-atlas-analysis-api

  Public
  The analysis API and task manager for Mykrobe atlas

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Dec 16, 2021Dec 16, 2021

• mykrobe-atlas

  Public
  00 forks•11 star•00 issues•00 pull requests•Updated Sep 23, 2021Sep 23, 2021

• mykrobe-atlas-kmersearch-pipeline

  Public
  Nextflow

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 20, 2021Aug 20, 2021

• mykrobe-atlas-kmersearch-api-client

  Public
  REST API client library for accessing Mykrobe Atlas Kmersearch API

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 9, 2021Jul 9, 2021

• mykrobe-atlas-jsonschema

  Public
  JSON Schemas associated with Mykrobe Atlas

  JavaScript

  •

  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 4, 2021Jun 4, 2021

• mykrobe-atlas-data-upload

  Public
  Documentation and scripts for uploading preprocessed analysis data to Kubernetes hosted applications.

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 21, 2021May 21, 2021

• mykrobe-atlas-kafka-consumer

  Public
  Java

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2021Apr 23, 2021

• mykrobe-atlas-tracking-client

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 23, 2021Feb 23, 2021

• mykrobe-atlas-background-variants-db

  Public
  A Mongo db which hosts tb background variants to support Mykrobe make probes functionality for Atlas

  Dockerfile

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 10, 2021Feb 10, 2021

• mykrobe-atlas-id-migrator

  Public
  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 20, 2020Nov 20, 2020

• mykrobe-atlas-distance-client

  Public
  REST API client library for accessing Mykrobe Atlas distance API

  Python

  •00 forks•00 stars•00 issues•00 pull requests•Updated Nov 6, 2020Nov 6, 2020

• mykrobe-atlas-api-k8

  Public
  Shell

  •00 forks•00 stars•00 issues•11 pull request•Updated Jun 25, 2020Jun 25, 2020

• mykrobe-atlas-keycloak

  Public archive
  Keycloak configuration for Atlas

  JavaScript

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2020Apr 30, 2020

• mykrobe-atlas-pipelines

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Apr 30, 2020Apr 30, 2020

• clockwork

  Public
  CRyPTIC data processing pipelines

  HTML

  •

  MIT License

  •2222 forks•11 star•00 issues•00 pull requests•Updated Jan 15, 2020Jan 15, 2020

• mykrobe-atlas-insight

  Public
  Insight pipeline for Mykrobe Atlas

  Shell

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 20, 2018Aug 20, 2018