Add neuropal script

Author: pgleeson

neuromlmodel.py

@@ -82,7 +82,7 @@ def add_neuroml_model(
                     "Plotting only sphere (radius: %s) %s(%i) at %s, %s"
                     % (radius, cell.id, cell_index, pos, pp)
                 )
-                sphere = pv.Sphere(center=(pp[0], pp[1], pp[2]), radius=radius)
+                sphere = pv.Sphere(center=(pp[0], pp[1], pp[2]), radius=radius * factor)
 
                 plotter.add_mesh(sphere, color=color)
 

neuropal.py

@@ -0,0 +1,16 @@
+import pyvista as pv
+
+import sys
+
+
+from neuromlmodel import add_neuroml_model
+
+if __name__ == "__main__":
+    plotter = pv.Plotter()
+
+    add_neuroml_model(plotter, "NeuroPAL_All_straightened.net.nml", somas_only=True)
+    plotter.set_background("white")
+    plotter.add_axes()
+
+    if "-nogui" not in sys.argv:
+        plotter.show()