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Expand file tree Collapse file tree Original file line number Diff line number Diff line change @@ -3,7 +3,7 @@ on: [push, pull_request]
33
44env :
55 APT_DEPS : libzstd-dev samtools tabix libhts-dev pigz python3-pip
6- BREW_DEPS : python@3.8 sqlite zstd samtools pigz
6+ BREW_DEPS : python@3.8 sqlite zstd samtools pigz coreutils
77 PIP_DEPS : pytest pytest-xdist
88
99jobs :
@@ -110,6 +110,7 @@ jobs:
110110 fetch-depth : 0
111111 - name : dependencies
112112 run : |
113+ rm -f /usr/local/bin/2to3 # https://github.com/pypa/pipenv/issues/3831
113114 brew update
114115 brew upgrade
115116 brew install $BREW_DEPS
@@ -186,9 +187,8 @@ jobs:
186187 run : |
187188 cp libgenomicsqlite.so libgenomicsqlite.dylib bindings/jdbc/genomicsqlite-jdbc/src/main/resources/
188189 mvn deploy -Drevision=${{ env.GIT_REVISION }} -B -f bindings/jdbc/genomicsqlite-jdbc/pom.xml
189- sha256sum *genomicsqlite* bindings/jdbc/genomicsqlite-jdbc/target/genomicsqlite*.jar
190190 - name : digests
191- run : sha256sum bindings/jdbc/genomicsqlite-jdbc/target/genomicsqlite*.jar
191+ run : sha256sum *genomicsqlite* bindings/jdbc/genomicsqlite-jdbc/target/genomicsqlite*.jar
192192 - uses : actions/upload-artifact@v2
193193 with :
194194 name : genomicsqlite-jdbc-${{ env.GIT_REVISION }}
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