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fix mac CI
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.github/workflows/build.yml

Lines changed: 3 additions & 3 deletions
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@@ -3,7 +3,7 @@ on: [push, pull_request]
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env:
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APT_DEPS: libzstd-dev samtools tabix libhts-dev pigz python3-pip
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BREW_DEPS: python@3.8 sqlite zstd samtools pigz
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BREW_DEPS: python@3.8 sqlite zstd samtools pigz coreutils
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PIP_DEPS: pytest pytest-xdist
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jobs:
@@ -110,6 +110,7 @@ jobs:
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fetch-depth: 0
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- name: dependencies
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run: |
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rm -f /usr/local/bin/2to3 # https://github.com/pypa/pipenv/issues/3831
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brew update
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brew upgrade
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brew install $BREW_DEPS
@@ -186,9 +187,8 @@ jobs:
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run: |
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cp libgenomicsqlite.so libgenomicsqlite.dylib bindings/jdbc/genomicsqlite-jdbc/src/main/resources/
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mvn deploy -Drevision=${{ env.GIT_REVISION }} -B -f bindings/jdbc/genomicsqlite-jdbc/pom.xml
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sha256sum *genomicsqlite* bindings/jdbc/genomicsqlite-jdbc/target/genomicsqlite*.jar
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- name: digests
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run: sha256sum bindings/jdbc/genomicsqlite-jdbc/target/genomicsqlite*.jar
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run: sha256sum *genomicsqlite* bindings/jdbc/genomicsqlite-jdbc/target/genomicsqlite*.jar
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- uses: actions/upload-artifact@v2
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with:
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name: genomicsqlite-jdbc-${{ env.GIT_REVISION }}

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