Automated dependency upgrades (#1040)

Author: tsmathis

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -10,9 +10,9 @@ bibtexparser==1.4.3
     # via pymatgen
 blake3==1.0.8
     # via emmet-core
-boto3==1.41.5
+boto3==1.42.4
     # via mp-api (pyproject.toml)
-botocore==1.41.5
+botocore==1.42.4
     # via
     #   boto3
     #   s3transfer
@@ -24,9 +24,9 @@ contourpy==1.3.3
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-emmet-core==0.86.2rc1
+emmet-core==0.86.2
     # via mp-api (pyproject.toml)
-fonttools==4.60.1
+fonttools==4.61.0
     # via matplotlib
 idna==3.11
     # via requests
@@ -51,7 +51,7 @@ mpmath==1.3.0
     # via sympy
 msgpack==1.1.2
     # via mp-api (pyproject.toml)
-narwhals==2.12.0
+narwhals==2.13.0
     # via plotly
 networkx==3.6
     # via pymatgen
@@ -127,7 +127,7 @@ ruamel-yaml==0.18.16
     #   pymatgen
 ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.15.0
+s3transfer==0.16.0
     # via boto3
 scipy==1.16.3
     # via pymatgen
@@ -160,7 +160,7 @@ tzdata==2025.2
     # via pandas
 uncertainties==3.2.3
     # via pymatgen
-urllib3==2.5.0
+urllib3==2.6.0
     # via
     #   botocore
     #   requests

requirements/requirements-ubuntu-latest_py3.11_extras.txt

@@ -26,9 +26,9 @@ blake3==1.0.8
     # via emmet-core
 boltons==25.0.0
     # via mpcontribs-client
-boto3==1.41.5
+boto3==1.42.4
     # via mp-api (pyproject.toml)
-botocore==1.41.5
+botocore==1.42.4
     # via
     #   boto3
     #   s3transfer
@@ -60,9 +60,9 @@ dnspython==2.8.0
     # via
     #   pyisemail
     #   pymongo
-docutils==0.21.2
+docutils==0.22.3
     # via sphinx
-emmet-core[all]==0.86.2rc1
+emmet-core[all]==0.86.2
     # via mp-api (pyproject.toml)
 execnet==2.1.2
     # via pytest-xdist
@@ -80,7 +80,7 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.60.1
+fonttools==4.61.0
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
@@ -100,7 +100,7 @@ inflect==7.5.0
     # via robocrys
 iniconfig==2.3.0
     # via pytest
-ipython==9.7.0
+ipython==9.8.0
     # via mpcontribs-client
 ipython-pygments-lexers==1.1.1
     # via ipython
@@ -139,10 +139,14 @@ latexcodec==3.0.1
     # via pybtex
 lazy-loader==0.4
     # via scikit-image
+librt==0.7.0
+    # via mypy
 markupsafe==3.0.3
     # via jinja2
 matminer==0.9.3
-    # via robocrys
+    # via
+    #   emmet-core
+    #   robocrys
 matplotlib==3.10.7
     # via
     #   ase
@@ -175,13 +179,13 @@ msgpack==1.1.2
     #   bravado
     #   bravado-core
     #   mp-api (pyproject.toml)
-mypy==1.18.2
+mypy==1.19.0
     # via mp-api (pyproject.toml)
 mypy-extensions==1.1.0
     # via
     #   mp-api (pyproject.toml)
     #   mypy
-narwhals==2.12.0
+narwhals==2.13.0
     # via plotly
 networkx==3.6
     # via
@@ -246,7 +250,7 @@ pillow==12.0.0
     #   scikit-image
 pint==0.25.2
     # via mpcontribs-client
-platformdirs==4.5.0
+platformdirs==4.5.1
     # via
     #   pint
     #   virtualenv
@@ -321,7 +325,7 @@ pymatgen-analysis-diffusion==2025.11.15
     # via emmet-core
 pymatgen-io-validation==0.1.2
     # via emmet-core
-pymongo==4.15.4
+pymongo==4.15.5
     # via
     #   matminer
     #   mpcontribs-client
@@ -389,9 +393,9 @@ rfc3987-syntax==1.1.0
     # via jsonschema
 robocrys==0.2.12
     # via emmet-core
-roman-numerals-py==3.1.0
+roman-numerals==3.1.0
     # via sphinx
-rpds-py==0.29.0
+rpds-py==0.30.0
     # via
     #   jsonschema
     #   referencing
@@ -402,7 +406,7 @@ ruamel-yaml==0.18.16
     #   pymatgen
 ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.15.0
+s3transfer==0.16.0
     # via boto3
 scikit-image==0.25.2
     # via pymatgen-analysis-defects
@@ -443,7 +447,7 @@ spglib==2.6.0
     #   pymatgen
     #   robocrys
     #   seekpath
-sphinx==8.2.3
+sphinx==9.0.4
     # via mp-api (pyproject.toml)
 sphinxcontrib-applehelp==2.0.0
     # via sphinx
@@ -521,7 +525,7 @@ uncertainties==3.2.3
     # via pymatgen
 uri-template==1.3.0
     # via jsonschema
-urllib3==2.5.0
+urllib3==2.6.0
     # via
     #   botocore
     #   requests

requirements/requirements-ubuntu-latest_py3.12.txt

@@ -10,9 +10,9 @@ bibtexparser==1.4.3
     # via pymatgen
 blake3==1.0.8
     # via emmet-core
-boto3==1.41.5
+boto3==1.42.4
     # via mp-api (pyproject.toml)
-botocore==1.41.5
+botocore==1.42.4
     # via
     #   boto3
     #   s3transfer
@@ -24,9 +24,9 @@ contourpy==1.3.3
     # via matplotlib
 cycler==0.12.1
     # via matplotlib
-emmet-core==0.86.2rc1
+emmet-core==0.86.2
     # via mp-api (pyproject.toml)
-fonttools==4.60.1
+fonttools==4.61.0
     # via matplotlib
 idna==3.11
     # via requests
@@ -51,7 +51,7 @@ mpmath==1.3.0
     # via sympy
 msgpack==1.1.2
     # via mp-api (pyproject.toml)
-narwhals==2.12.0
+narwhals==2.13.0
     # via plotly
 networkx==3.6
     # via pymatgen
@@ -127,7 +127,7 @@ ruamel-yaml==0.18.16
     #   pymatgen
 ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.15.0
+s3transfer==0.16.0
     # via boto3
 scipy==1.16.3
     # via pymatgen
@@ -159,7 +159,7 @@ tzdata==2025.2
     # via pandas
 uncertainties==3.2.3
     # via pymatgen
-urllib3==2.5.0
+urllib3==2.6.0
     # via
     #   botocore
     #   requests

requirements/requirements-ubuntu-latest_py3.12_extras.txt

@@ -26,9 +26,9 @@ blake3==1.0.8
     # via emmet-core
 boltons==25.0.0
     # via mpcontribs-client
-boto3==1.41.5
+boto3==1.42.4
     # via mp-api (pyproject.toml)
-botocore==1.41.5
+botocore==1.42.4
     # via
     #   boto3
     #   s3transfer
@@ -60,9 +60,9 @@ dnspython==2.8.0
     # via
     #   pyisemail
     #   pymongo
-docutils==0.21.2
+docutils==0.22.3
     # via sphinx
-emmet-core[all]==0.86.2rc1
+emmet-core[all]==0.86.2
     # via mp-api (pyproject.toml)
 execnet==2.1.2
     # via pytest-xdist
@@ -80,7 +80,7 @@ flexcache==0.3
     # via pint
 flexparser==0.4
     # via pint
-fonttools==4.60.1
+fonttools==4.61.0
     # via matplotlib
 fqdn==1.5.1
     # via jsonschema
@@ -100,7 +100,7 @@ inflect==7.5.0
     # via robocrys
 iniconfig==2.3.0
     # via pytest
-ipython==9.7.0
+ipython==9.8.0
     # via mpcontribs-client
 ipython-pygments-lexers==1.1.1
     # via ipython
@@ -139,10 +139,14 @@ latexcodec==3.0.1
     # via pybtex
 lazy-loader==0.4
     # via scikit-image
+librt==0.7.0
+    # via mypy
 markupsafe==3.0.3
     # via jinja2
 matminer==0.9.3
-    # via robocrys
+    # via
+    #   emmet-core
+    #   robocrys
 matplotlib==3.10.7
     # via
     #   ase
@@ -175,13 +179,13 @@ msgpack==1.1.2
     #   bravado
     #   bravado-core
     #   mp-api (pyproject.toml)
-mypy==1.18.2
+mypy==1.19.0
     # via mp-api (pyproject.toml)
 mypy-extensions==1.1.0
     # via
     #   mp-api (pyproject.toml)
     #   mypy
-narwhals==2.12.0
+narwhals==2.13.0
     # via plotly
 networkx==3.6
     # via
@@ -246,7 +250,7 @@ pillow==12.0.0
     #   scikit-image
 pint==0.25.2
     # via mpcontribs-client
-platformdirs==4.5.0
+platformdirs==4.5.1
     # via
     #   pint
     #   virtualenv
@@ -321,7 +325,7 @@ pymatgen-analysis-diffusion==2025.11.15
     # via emmet-core
 pymatgen-io-validation==0.1.2
     # via emmet-core
-pymongo==4.15.4
+pymongo==4.15.5
     # via
     #   matminer
     #   mpcontribs-client
@@ -389,9 +393,9 @@ rfc3987-syntax==1.1.0
     # via jsonschema
 robocrys==0.2.12
     # via emmet-core
-roman-numerals-py==3.1.0
+roman-numerals==3.1.0
     # via sphinx
-rpds-py==0.29.0
+rpds-py==0.30.0
     # via
     #   jsonschema
     #   referencing
@@ -402,7 +406,7 @@ ruamel-yaml==0.18.16
     #   pymatgen
 ruamel-yaml-clib==0.2.15
     # via ruamel-yaml
-s3transfer==0.15.0
+s3transfer==0.16.0
     # via boto3
 scikit-image==0.25.2
     # via pymatgen-analysis-defects
@@ -443,7 +447,7 @@ spglib==2.6.0
     #   pymatgen
     #   robocrys
     #   seekpath
-sphinx==8.2.3
+sphinx==9.0.4
     # via mp-api (pyproject.toml)
 sphinxcontrib-applehelp==2.0.0
     # via sphinx
@@ -519,7 +523,7 @@ uncertainties==3.2.3
     # via pymatgen
 uri-template==1.3.0
     # via jsonschema
-urllib3==2.5.0
+urllib3==2.6.0
     # via
     #   botocore
     #   requests