fix(uv): Remove unnecessary --all-extras and --all-groups from sync commands

The `--all-extras` and `--all-groups` flags for `uv sync` were causing issues with dependency resolution and environment setup in local development, direnv integration, and ReadTheDocs builds. Removing these flags simplifies the `uv sync` command, relying on its default behavior which correctly handles the project's dependencies without these specific options, thus fixing potential installation and environment activation problems.

Author: liblaf

template/.config/copier/mise-tasks/install.sh

@@ -18,5 +18,5 @@ fi
 if [[ -f 'uv.lock' ]]; then
   uv='uv'
   if has uv-wrapper.sh; then uv='uv-wrapper.sh'; fi
-  "$uv" sync --all-extras --all-groups "$@"
+  "$uv" sync "$@"
 fi

template/.config/direnv/10-python.sh

@@ -21,7 +21,7 @@ fi
 if [[ -f 'uv.lock' ]]; then
   uv='uv'
   if has uv-wrapper.sh; then uv='uv-wrapper.sh'; fi
-  "$uv" sync --all-extras --all-groups
+  "$uv" sync
   sed --in-place --regexp-extended \
     's|\s*(include-system-site-packages)\s*=\s*.*\s*|\1 = true|' '.venv/pyvenv.cfg'
   # shellcheck disable=SC1091

template/.readthedocs.yaml.jinja

@@ -38,7 +38,7 @@ build:
       # %% if package_manager == "pixi":
       - pixi install --frozen
       # %% elif package_manager == "uv":
-      - UV_PROJECT_ENVIRONMENT="${READTHEDOCS_VIRTUALENV_PATH}" uv sync --all-extras --all-groups --frozen --all-packages --link-mode copy
+      - UV_PROJECT_ENVIRONMENT="${READTHEDOCS_VIRTUALENV_PATH}" uv sync --frozen --all-packages --link-mode copy
       # %% endif
 
     pre_build: