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[pre-commit.ci] auto fixes from pre-commit.com hooks
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1 parent e9fcd17 commit b7f69d0

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Lines changed: 4 additions & 2 deletions

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ALLCools/count_matrix/dataset.py

Lines changed: 4 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -211,7 +211,9 @@ def _calculate_pv(data, reverse_value, obs_dim, var_dim, cutoff=0.9):
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return pv
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def _count_single_zarr(allc_table, region_config, obs_dim, obs_dim_dtype, region_dim, chunk_start, regiongroup, count_dtype="uint32"):
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def _count_single_zarr(
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allc_table, region_config, obs_dim, obs_dim_dtype, region_dim, chunk_start, regiongroup, count_dtype="uint32"
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):
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"""Process single region set and its quantifiers."""
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# count all ALLC and mC types that's needed for quantifiers if this region_dim
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count_ds = _count_single_region_set(
@@ -390,7 +392,7 @@ def generate_dataset(
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allc_table=allc_chunk,
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region_config=region_config,
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obs_dim=obs_dim,
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obs_dim_dtype = obs_dim_dtype,
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obs_dim_dtype=obs_dim_dtype,
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region_dim=region_dim,
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chunk_start=chunk_start,
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regiongroup=regiongroup,

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