[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

Author: pre-commit-ci[bot]

ALLCools/_extract_allc.py

@@ -85,11 +85,11 @@ def _extract_bed5_format(allc_line_list):
             # mc and cov is binarized
             allc_line_list[4], allc_line_list[5] = binary_count(int(allc_line_list[4]), int(allc_line_list[5]))
             allc_line_list = [
-                allc_line_list[0], # chr
-                int(allc_line_list[1])-1, # convert position to 0-based for start
-                int(allc_line_list[1]), # keep position 1-based for end
-                allc_line_list[4], # mC
-                allc_line_list[5] # cov
+                allc_line_list[0],  # chr
+                int(allc_line_list[1]) - 1,  # convert position to 0-based for start
+                int(allc_line_list[1]),  # keep position 1-based for end
+                allc_line_list[4],  # mC
+                allc_line_list[5],  # cov
             ]
             return "\t".join(map(str, allc_line_list)) + "\n"
 
@@ -102,11 +102,11 @@ def _extract_allc_format(allc_line_list):
         def _extract_bed5_format(allc_line_list):
             # only chrom, pos, pos, mc, cov
             allc_line_list = [
-                allc_line_list[0], # chr
-                int(allc_line_list[1])-1, # convert position to 0-based for start
-                int(allc_line_list[1]), # keep position 1-based for end
-                allc_line_list[4], # mC
-                allc_line_list[5] # cov
+                allc_line_list[0],  # chr
+                int(allc_line_list[1]) - 1,  # convert position to 0-based for start
+                int(allc_line_list[1]),  # keep position 1-based for end
+                allc_line_list[4],  # mC
+                allc_line_list[5],  # cov
             ]
             return "\t".join(map(str, allc_line_list)) + "\n"