The package is being updated to provide more detailed documentation for two of the functions.
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The package is being updated to correct a bug associated with the Private.alleles function. Apologies for resubmitting relatively quickly (~6 weeks), thank you for your time.
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Pls reudce top less than 5 MB for a CRAN package.
I have reduced the package size by adding the /vignettes/articles subdirectory to .Rbuildignore. The package size is now ~2 MB.
There were no errors, notes, or warnings.
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Both words are spelled correctly.
There were no errors, notes, or warnings.
August 15th, 2023; This is a resubmission of a package that was archived, I have included the comments from the CRAN maintainer, my changes, and check results below.
rnaturalearthhires is not even mentioned in the DESCRIPTION file. It
needs to be in Suggests, and used conditionally.
The package has been updated to use spData instead of rnaturalearth. The DESCRIPTION file has been updated accordingly.
There was 1 NOTE
Maintainer: 'Keaka Farleigh <keakafarleigh@gmail.com>'
New submission
Package was archived on CRAN
Possibly misspelled words in DESCRIPTION:
Genomic (2:30)
csv (9:159)
genomic (9:48)
vcf (9:151)
The words are not mispelled. I have addressed the issues that led to the package being archived. See above regarding the rnaturalearthhires issue.
There was 1 NOTE
Maintainer: 'Keaka Farleigh <keakafarleigh@gmail.com>'
New submission
Package was archived on CRAN
Possibly misspelled words in DESCRIPTION:
Genomic (2:30)
csv (9:159)
genomic (9:48)
vcf (9:151)
The words are not mispelled. I have addressed the issues that led to the package being archived. See above regarding the rnaturalearthhires issue.
There were no errors, notes, or warnings.
July 7th, 2023; This is a resubmission , I have included the comments from the CRAN maintainer and my changes below.
rnaturalearthhires is not even mentioned in the DESCRIPTION file. It
needs to be in Suggests, and used conditionally.
I have updated the DESCRIPTION file to include rnaturalearthhires in Suggests and now use it conditonally.
Please remove the redundant "A Package to" from your title.
This has been removed and the title has been changed to "Streamline Population Genomic and Genetic Analyses""
Please always write package names, software names and API (application
programming interface) names in single quotes in title and description.
e.g: --> 'PopGenHelpR'
Please note that package names are case sensitive.
The package name has been placed in single quotes in the description.
If there are references describing the methods in your package, please
add these in the description field of your DESCRIPTION file in the form
authors (year) <doi:...>
authors (year) <arXiv:...>
authors (year, ISBN:...)
or if those are not available: <https:...>
with no space after 'doi:', 'arXiv:', 'https:' and angle brackets for
auto-linking.
(If you want to add a title as well please put it in quotes: "Title")
There is no paper for the package at this time.
\dontrun{} should only be used if the example really cannot be executed
(e.g. because of missing additional software, missing API keys, ...) by
the user. That's why wrapping examples in \dontrun{} adds the comment
("# Not run:") as a warning for the user.
Does not seem necessary.
Please unwrap the examples if they are executable in < 5 sec, or create
additionally small toy examples to allow automatic testing.
(You could also replace \dontrun{} with \donttest, if it takes longer
than 5 sec to be executed, but it would be preferable to have automatic
checks for functions. Otherwise, you can also write some tests.)
All examples have been changed from \dontrun to \donttest.
Please ensure that your functions do not write by default or in your
examples/vignettes/tests in the user's home filespace (including the
package directory and getwd()). This is not allowed by CRAN policies.
Please omit any default path in writing functions. In your
examples/vignettes/tests you can write to tempdir().
All vignette examples have been set to eval = FALSE so that they do not write anything out. Examples have been set to donttest so that they do not write into teh user's home filespace.
0 errors | 0 warnings | 1 note
* This is a new release.
There were no ERRORs, WARNINGs, or NOTEs.
There was 1 NOTE:
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Keaka Farleigh <keakafarleigh@gmail.com>'
New submission
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Keaka Farleigh <keakafarleigh@gmail.com>'
New submission
Possibly misspelled words in DESCRIPTION:
PopGenHelpR (9:132)
csv (9:157)
vcf (9:149)
The words are spelled correctly
* checking for detritus in the temp directory ... NOTE
Found the following files/directories:
'lastMiKTeXException'
As noted in R-hub issue #503, this could be due to a bug/crash in MiKTeX and can likely be ignored.
There was 1 NOTE:
* checking CRAN incoming feasibility ... [8s] NOTE
Maintainer: 'Keaka Farleigh <keakafarleigh@gmail.com>'
New submission
Possibly misspelled words in DESCRIPTION:
Genomic (2:43)
PopGenHelpR (9:132)
csv (9:157)
genomic (9:48)
vcf (9:149)
The words are spelled correctly