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@@ -145,9 +145,9 @@ When computing concordance factors please cite:
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When using AliSim to simulate alignments please cite:
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* N. Ly-Trong, S. Naser-Khdour, R. Lanfear, B.Q. Minh (2022)
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AliSim: A Fast and Versatile Phylogenetic Sequence Simulator for the Genomic Era.
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*Mol. Biol. Evol.*, 39:msac092. <https://doi.org/10.1093/molbev/msac092>
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* N. Ly-Trong, G.M.J. Barca, B.Q. Minh (2023)
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AliSim-HPC: parallel sequence simulator for phylogenetics.
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*Bioinformatics*, 39:btad540. <https://doi.org/10.1093/bioinformatics/btad540>
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When estimating amino-acid Q matrix please cite:
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@@ -219,11 +219,18 @@ IQ-TREE is actively developed by:
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**Bui Quang Minh**, _Team leader_, Designs and implements software core, tree search, ultrafast bootstrap, model selection.
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**Robert Lanfear**, _Co-leader_, Model selection.
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**Robert Lanfear**, _Co-leader_, Co-leading various projects (incl. new model selection) and documentations, acting
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as a bridge with biologists.
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**Thomas Wong**, _Developer_, Mixture models, model selection.
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**Nhan Ly-Trong**, _Developer_, sequence simulator, pathogen phylogeny reconstruction.
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**Piyumal Demotte**, time tree inference.
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**Olga Chernomor**, _Developer_, Implements partition models.
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**Heiko A. Schmidt**, _Developer_, Integrates TREE-PUZZLE features.
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**Heiko A. Schmidt**, _Developer_, Integrates TREE-PUZZLE features, user supports and documentations.
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**Dominik Schrempf**, _Developer_, Implements polymorphism-aware models (PoMo).
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@@ -239,6 +246,7 @@ Past members:
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**Jana Trifinopoulos**, _Developer_, Implemented web service.
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**James Barbetti**, _Developer_, Code optimization.
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Credits and acknowledgements
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