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Update MixtureFinder
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doc/Complex-Models.md

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@@ -156,13 +156,13 @@ Here, we estimate the optimal Q mixture model. To select mixture model and then
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iqtree -s example.phy -m MIX+MFP
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BIC is the default criterion to assess the number of classes in the Q mixture model. AIC, AICc or Likelihood ratio test (LRT) are also available to assess the number of classes.
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BIC is the default criterion to assess the number of classes in the Q mixture model. AIC, AICc or likelihood ratio test (LRT) are also available to assess the number of classes.
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To use AIC:
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iqtree -s example.phy -m MIX+MF -merit AIC
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To useLikelihood ratio test (LRT) with p-value = 0.05 to assess the number of classes:
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To use likelihood ratio test with p-value = 0.05 to assess the number of classes:
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iqtree -s example.phy -m MIX+MF -lrt 0.05
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@@ -417,3 +417,4 @@ Please note that, in any MAST model with more than one substitution model (i.e.
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[Wang et al., 2008]: https://doi.org/10.1186/1471-2148-8-331
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