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johannesringjohannesring
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Merge pull request #627 from hashdist/johannr/hypre
Add hypre
2 parents 36b41d8 + 6306e2d commit 8ca05b4

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Lines changed: 180 additions & 5 deletions

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‎pkgs/hypre.yaml‎

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extends: [autotools_package]
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dependencies:
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build: [blas, gnu-sed, lapack, mpi]
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sources:
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- key: tar.gz:qs6kil25x247lxjlzlvwdhsgbv5tpcye
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url: http://ftp.mcs.anl.gov/pub/petsc/externalpackages/hypre-2.9.1a.tar.gz
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defaults:
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# Skip build-time tests (not recommended)
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without_check: false
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# Build with Accelerate framework (on OS X)
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with_accelerate: false
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# Build with OpenBLAS
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with_openblas: false
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# Build with debug flags
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debug: false
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build_stages:
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# lib/Makefile treats the hypre internal BLAS & LAPACK implementations
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# as dependencies for libHYPRE.a (the hypre library). When building with
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# an external BLAS library, strip out these dependencies.
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- name: external-BLAS
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before: configure
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handler: bash
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bash: |
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sed -i 's/.*BLASFILES.*//g' src/lib/Makefile
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sed -i 's/.*LAPACKFILES.*//g' src/lib/Makefile
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- name: enter-src-dir
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before: configure
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after: external-BLAS
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handler: bash
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bash: |
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cd src
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- name: set-compiler
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after: prologue
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before: configure
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handler: bash
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bash: |
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export CC=${MPICC}
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export CXX=${MPICXX}
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export F77=${MPIF77}
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- when: with_openblas
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name: configure
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mode: update
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extra: ["--with-blas=yes",
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"--with-blas-libs=openblas",
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"--with-blas-lib-dirs=${BLAS_DIR}/lib",
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"--with-lapack=yes",
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"--with-lapack-libs=openblas",
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"--with-lapack-lib-dirs=${BLAS_DIR}/lib"]
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- when: with_accelerate and not with_openblas
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# Libraries used for linking to Accelerate framework; `otool -L`
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# shows that these libraries link to the same dylibs that the
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# Accelerate framework libraries do. Using the
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# "-framework Accelerate" flag would be preferable, but setting
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# CFLAGS, etc. overrides the flags in the Makefile and results
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# in errors.
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name: configure
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mode: update
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extra: ["--with-blas=yes",
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'--with-blas-libs="blas cblas"',
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"--with-blas-lib-dirs=/usr/lib",
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"--with-lapack=yes",
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'--with-lapack-libs="lapack clapack f77lapack"',
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"--with-lapack-lib-dirs=/usr/lib"]
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- when: not with_accelerate and not with_openblas
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name: configure
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mode: update
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extra: ["--with-blas=yes",
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'--with-blas-libs=blas',
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"--with-blas-lib-dirs=${BLAS_DIR}/lib",
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"--with-lapack=yes",
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'--with-lapack-libs=lapack',
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"--with-lapack-lib-dirs=${LAPACK_DIR}/lib"]
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- when: debug
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name: configure
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mode: update
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extra: ["--enable-debug"]
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- when: not fortran
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name: configure
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mode: update
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extra: ["--disable-fortran"]
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- name: configure
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mode: update
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extra: ["--with-MPI",
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"--with-MPI-include=${MPI_DIR}/include",
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"--with-MPI-lib-dirs=${MPI_DIR}/lib",
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# MPI library strings for linking depends on compilers
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# enabled. Only the C library strings are needed (without the
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# lib), because hypre is a C library.
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'--with-MPI-lib="mpi"']
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- name: configure
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mode: update
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extra: ["--without-babel",
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"--without-mli",
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"--without-fei",
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"--without-superlu"]
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- when: platform != 'Darwin'
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name: configure
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mode: update
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extra: ["--enable-shared"]
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- when: platform == 'linux'
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name: rpath-fix
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after: install
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handler: bash
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bash: |
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oldRPath=$(${PATCHELF} --print-rpath ${ARTIFACT}/lib/libHYPRE.so)
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${PATCHELF} --set-rpath ${oldRPath}:${ARTIFACT}/lib:${BLAS_DIR}/lib:${LAPACK_DIR}/lib:${MPI_DIR}/lib ${ARTIFACT}/lib/libHYPRE.so
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- when: platform != 'linux'
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name: rpath-fix
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after: install
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handler: bash
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bash: |
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- when: not without_check and platform == 'linux'
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name: check
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after: rpath-fix
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handler: bash
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bash: |
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make check
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make test
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${PATCHELF} --set-rpath ${ARTIFACT}/lib:${BLAS_DIR}/lib:${LAPACK_DIR}/lib:${MPI_DIR}/lib test/ij
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${PATCHELF} --set-rpath ${ARTIFACT}/lib:${BLAS_DIR}/lib:${LAPACK_DIR}/lib:${MPI_DIR}/lib test/struct
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${PATCHELF} --set-rpath ${ARTIFACT}/lib:${BLAS_DIR}/lib:${LAPACK_DIR}/lib:${MPI_DIR}/lib test/sstruct
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./test/ij
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./test/struct
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./test/sstruct -in test/sstruct.in.default -solver 40 -rhsone
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- when: not without_check and platform != 'linux'
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name: check
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after: rpath-fix
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handler: bash
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bash: |
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make check
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make test
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./test/ij
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./test/struct
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./test/sstruct -in test/sstruct.in.default -solver 40 -rhsone
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- when: without_check
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name: check
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after: rpath-fix
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handler: bash
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bash: |
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- name: caveats
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after: check
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handler: bash
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bash: |
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echo "Please register for hypre at:"
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echo
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echo "https://computation.llnl.gov/project/linear_solvers/download/hypre-2.9.0b_reg.php"

‎pkgs/petsc/petsc.py‎

Lines changed: 14 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -36,7 +36,7 @@ def configure(ctx, stage_args):
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coptflags: -O2
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link: shared
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debug: false
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Note: this is a fairly sophisticated build stage that inspects
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the build artifacts available to decide what to enable in PETSc.
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By default, this package builds PETSc with all required artifacts,
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if stage_args['coptflags']:
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conf_lines.append('COPTFLAGS=%s' % stage_args['coptflags'])
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if stage_args['link']:
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conf_lines.append('--with-shared-libraries=%d' %
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conf_lines.append('--with-shared-libraries=%d' %
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bool(stage_args['link'] == 'shared'))
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# must explicitly set --with-debugging=0 to disable debugging
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conf_lines.append('--with-debugging=%d' % stage_args['debug'])
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conf_lines.append('--with-blas-dir=$BLAS_DIR')
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conf_lines.append('--with-lapack-dir=$LAPACK_DIR')
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# Special case, ParMETIS also provides METIS
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# Special case, ParMETIS also provides METIS
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if 'PARMETIS' in ctx.dependency_dir_vars:
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conf_lines.append('--with-metis-dir=$PARMETIS_DIR')
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conf_lines.append('--with-parmetis-dir=$PARMETIS_DIR')
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conf_lines.append('--with-suitesparse-include=${SUITESPARSE_DIR}/include/suitesparse')
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conf_lines.append('--with-suitesparse-lib=[${SUITESPARSE_DIR}/lib/libumfpack.a,libklu.a,libcholmod.a,libbtf.a,libccolamd.a,libcolamd.a,libcamd.a,libamd.a,libsuitesparseconfig.a]')
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if 'HYPRE' in ctx.dependency_dir_vars:
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if ctx.parameters['platform'] == 'Darwin':
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libHYPRE = '${HYPRE_DIR}/lib/libHYPRE.a'
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else:
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libHYPRE = '${HYPRE_DIR}/lib/libHYPRE.so'
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conf_lines.append('--with-hypre=1')
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conf_lines.append('--with-hypre-include=${HYPRE_DIR}/include')
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conf_lines.append('--with-hypre-lib=%s' % libHYPRE)
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for dep_var in ctx.dependency_dir_vars:
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if dep_var in ['BLAS', 'LAPACK', 'OPENBLAS', 'PARMETIS',
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if dep_var in ['BLAS', 'HYPRE', 'LAPACK', 'OPENBLAS', 'PARMETIS',
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'SCOTCH', 'TRILINOS', 'SUITESPARSE']:
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continue
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if dep_var == 'MPI':
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else:
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conf_lines.append('--with-fc=0')
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continue
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conf_lines.append('--with-%s-dir=$%s_DIR' %
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conf_lines.append('--with-%s-dir=$%s_DIR' %
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(dep_var.lower(),
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dep_var))
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for package in stage_args['download']:

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