Add files via upload

Author: hahnlab-user

publications.html

@@ -72,7 +72,9 @@
             <li><strong>2025</strong></li>
             <li>
 
-				<p>Larson, D.A., M.W. Itgen, R.D. Denton, and M.W. Hahn (in press) Reconsidering cytonuclear discordance in the genomic age. <em>Evolution</em>. </p>
+				<p>Smith, M.L. and M.W. Hahn (<em>in press</em>) Using gene trees with lineage-specific duplicates for phylogenetic inference mitigates the effects of long-branch attraction. <em>Systematic Biology</em>. </p>
+				
+				<p>Larson, D.A., M.W. Itgen, R.D. Denton, and M.W. Hahn (<em>in press</em>) Reconsidering cytonuclear discordance in the genomic age. <em>Evolution</em>. </p>
 
 				<p>Rickert, D.A., W.-T. Fan, and M.W Hahn (<em>in press</em>) Inconsistency of parsimony under the multispecies coalescent. <em>Theoretical Population Biology</em>. </p>
 

software.html

@@ -124,13 +124,13 @@ <h3>Software</h3>
 
 			<li><strong>NoDEAR: </strong>No Disequilibrium Estimation of Accurate Recombination</li>
             <ul>
-            	<li><a href="https://github.com/meganlsmith/phyloGAN/">[Download]</a> <a href="publications.html#phyloGAN">[Citation]</a></li>
+            	<li><a href="https://github.com/smishra677/nodear">[Download]</a> <a href="publications.html#NoDEAR">[Citation]</a></li>
             	<li></li>
             </ul>
 
 			<li><strong>reconcILS: </strong>Gene tree-species tree reconciliation with ILS</li>
             <ul>
-            	<li><a href=" https://github.com/smishra677/reconcILS">[Download]</a> <a href="https://www.biorxiv.org/content/10.1101/2023.11.03.565544v4">[Citation]</a></li>
+            	<li><a href="https://github.com/smishra677/reconcILS">[Download]</a> <a href="https://www.biorxiv.org/content/10.1101/2023.11.03.565544v4">[Citation]</a></li>
             	<li></li>
             </ul>