DOC add merged notebook with only notebooks for model fitting, change index accordingly (#17)

* ENH add option in makefile to make a reduced version of merged notebooks

* Add merged notebooks with model fitting only

* Add merged notebook about model fitting to index

* DOC fix index

* DOC index

Author: mvdoc

doc/Makefile

@@ -47,6 +47,17 @@ merge-notebooks:
 		> $(NBDIR)/merged_for_colab.ipynb
 	echo "Saved in $(NBDIR)/merged_for_colab.ipynb"
 
+
+merge-notebooks-model-fitting:
+	python merge_notebooks.py \
+		$(NBDIR)/00_setup_colab.ipynb \
+		$(NBDIR)/01_plot_explainable_variance.ipynb \
+		$(NBDIR)/03_plot_wordnet_model.ipynb \
+		$(NBDIR)/05_plot_motion_energy_model.ipynb \
+		$(NBDIR)/06_plot_banded_ridge_model.ipynb \
+		> $(NBDIR)/merged_for_colab_model_fitting.ipynb
+	echo "Saved in $(NBDIR)/merged_for_colab_model_fitting.ipynb"
+
 all:
 	$(MAKE) html-noplot
 	$(MAKE) notebooks

doc/index.rst

@@ -19,8 +19,9 @@ To explore these tutorials, one can:
 - run the Jupyter notebooks (`tutorials/notebooks
   <https://github.com/gallantlab/voxelwise_tutorials/tree/main/tutorials/notebooks>`_
   directory)
-- run the merged notebook in
-  `Google Colab <https://colab.research.google.com/github/gallantlab/voxelwise_tutorials/blob/main/tutorials/notebooks/shortclips/merged_for_colab.ipynb>`_
+- run the notebooks in Google Colab: 
+  `all notebooks <https://colab.research.google.com/github/gallantlab/voxelwise_tutorials/blob/main/tutorials/notebooks/shortclips/merged_for_colab.ipynb>`_ or
+  `only the notebooks about model fitting <https://colab.research.google.com/github/gallantlab/voxelwise_tutorials/blob/main/tutorials/notebooks/shortclips/merged_for_colab_model_fitting.ipynb>`_
 
 The tutorials are best explored in order, starting with the `Shortclips
 tutorial <_auto_examples/index.html>`_.